Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0622 ATGAACGAGATTTTCATTTCTCTTATTCTACTCTTTCTGGGTATAGCGGCTTTGGTGTTGATCCATGTATGCGTAGTGGGGAGGGCTATGCGTAGTGGAGATCATGAAGAACAGATAAATGGTGATTTTGATGGAATTGTTGCGAATAAGATGTCAATTCAGGAGATGAAGGATCTCCCCTGTTTTGAGTATAAAGAAACAGATAAAAAAGGAGGAGGAGGAGGTAGCAGCAGCAGAATCACTGTGGATTGTGCAGTTTGCTTAGAGAGCCTCAAGGATGGTGATAAGTGCAGATTCTTACCTAATTGCTCACATAGCTTCCATGTCTCTTGCATAGATTCATGGATTCTTAAAACACCCATTTGTCCAATTTGCAGAACCTGGGTTCATTTGCCCACCTTTTCCACTAAGCTTGTTACCCAGCAGGTTGATACTTCACAAAATGTTGCAATTGAGATTGTATAG 465 0.4108 MNEIFISLILLFLGIAALVLIHVCVVGRAMRSGDHEEQINGDFDGIVANKMSIQEMKDLPCFEYKETDKKGGGGGSSSRITVDCAVCLESLKDGDKCRFLPNCSHSFHVSCIDSWILKTPICPICRTWVHLPTFSTKLVTQQVDTSQNVAIEIV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0622 154 SUPERFAMILY RING/U-box 54 133 - -
Mibi13g0622 154 Pfam Ring finger domain 83 126 IPR001841 -
Mibi13g0622 154 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 130 - -
Mibi13g0622 154 SMART ring_2 84 125 IPR001841 -
Mibi13g0622 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 131 IPR013083 -
Mibi13g0622 154 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
Mibi13g0622 154 FunFam RING-H2 finger protein ATL2K 51 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0622 Mibi-ChrMibi13 8183977 8184441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0622 48 131 C3H Transcription Factor Family AT2G18670 38.095 1.38e-16 71.2