Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0539 ATGGCAGAAATTTGCCTTCTTTCTTTGCCCTCACTATTGTGCAACCAAACCAAACATCCCCATTTCTCAACCTTTCCTTCCAAATCCCTCAAGCTTCACCTTTCGTGCTCCAACTCTTCACTCTTTTTTCCTCCTCCATCTCTCATCAAGAGAAACCATTCTTCCTCTATATTGACATTTGTTGCACAGACATCGGATTGGGCCCAGCAAGAAGCTGAAAACACTGTTTCTGTTGGAGACGACGATAATACCGAAGCTGGCCTTTCGGACTGGGAGGCTGAAGAACCACCTGAAGATGCCAAACTCTATGTCGGTAACTTGCCTTTTGATGTTGATAGCCAAAAATTGGCTATGCTTTTTGAGCAAGCTGGAACCGTTGAAATTGCCGAGGTGATCTATAACAGGGAGACTGATCGAAGTCGTGGCTTCGGATTTGTAACGATGAGCACTGTCGAAGAAGCTGAGAAAGCTGTAGAAAAATTCAGCCGCTATGATCTAGATGGAAGACTACTGACTGTTAATAAGGCTGCTCCGAGAGGATCAAGGCCTGAACGTCCTCCTCGTGCCTTTGAACCTGCATTCAAAATCTACATTGGCAATCTGCCGTTTGATGTTGATAATGCTCAGCTAGAGCAAATCTTCAGTAAACAAGGCACGGTTTTGGATGCTTGGATAGTTAATGACAGAGAGACCGGCCGGTCACGCGGTTTTGGCTTCGTCACAATGGCCAGTGAGTCTGAAATGAATGATGCTATTGCTGCTCTTGATGGTCAGAGTGTGGATGGGAGAGCGATCAAAGTGAGTGCTGCTGTGGAAAGGCCCAGGCGTGGTTCCTTTTGA 840 0.4631 MAEICLLSLPSLLCNQTKHPHFSTFPSKSLKLHLSCSNSSLFFPPPSLIKRNHSSSILTFVAQTSDWAQQEAENTVSVGDDDNTEAGLSDWEAEEPPEDAKLYVGNLPFDVDSQKLAMLFEQAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEKFSRYDLDGRLLTVNKAAPRGSRPERPPRAFEPAFKIYIGNLPFDVDNAQLEQIFSKQGTVLDAWIVNDRETGRSRGFGFVTMASESEMNDAIAALDGQSVDGRAIKVSAAVERPRRGSF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0539 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Mibi13g0539 279 Gene3D - 184 279 IPR012677 -
Mibi13g0539 279 CDD RRM_HP0827_like 195 270 - -
Mibi13g0539 279 FunFam 31 kDa ribonucleoprotein, chloroplastic 184 278 - -
Mibi13g0539 279 SMART rrm1_1 195 268 IPR000504 GO:0003723
Mibi13g0539 279 SMART rrm1_1 101 174 IPR000504 GO:0003723
Mibi13g0539 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 171 IPR000504 GO:0003723
Mibi13g0539 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 266 IPR000504 GO:0003723
Mibi13g0539 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Mibi13g0539 279 MobiDBLite consensus disorder prediction 73 96 - -
Mibi13g0539 279 CDD RRM_HP0827_like 101 178 - -
Mibi13g0539 279 SUPERFAMILY RNA-binding domain, RBD 186 277 IPR035979 GO:0003676
Mibi13g0539 279 PANTHER OS02G0815200 PROTEIN 21 273 - -
Mibi13g0539 279 Gene3D - 60 183 IPR012677 -
Mibi13g0539 279 SUPERFAMILY RNA-binding domain, RBD 93 188 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0539 Mibi-ChrMibi13 7248072 7249935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0539 102 279 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 5.87e-12 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0344 09 4308739 4311535 Mibi13g0539 13 7248072 7249935 CCT
Mibi09g0344 09 4308739 4311535 Mibi13g0539 13 7248072 7249935 ECH
Mibi13g0539 13 7248072 7249935 Mibi13g0539 13 7248072 7249935 ECH