Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0523 ATGACCACCTCTTCCCTACTCTCTCTCCTCCTCCCTCTCTCCCTCCTTCTCTCCATTTCCCTCATTTCCTCAAGACCCCTCCATGACCCAGAATTGGTAGTACAAGAAGTGAACAGTAAGATCAATGCTTCAATGGCGGCTAGGAGGAACTTGGGGTACCTATCATGTGGTACAGGGAACCCCATTGATGATTGTTGGAGGTGTGACCCAGACTGGGAGAACAACAGGCAGAGGCTAGCCGATTGTGCAATTGGGTTCGGTAAGAATGCCGTCGGAGGAAAGGGCGGAGATATCTACGTGGTGACGGACTCCGGCGACGACGACCCGGTGAACCCGAAGCCGGGGACACTCCGGTACGCCGTGATCCAAGACGAGCCATTATGGATCACATTTGCACGTGACATGGTGATCCAATTGAAAGAAGAGTTGATCATGAACTCTTTCAAAACAATCGACGGTCGAGGAGCGAGCGTGCATATTGCGGGGGGCCCATGCATAACGATCCAGTACGTGACCAACATTATAATCCATGGGATTCACATACATGATTGTAAGCAAGGTGGGAATACTTTGGTGAGGGACTCCCCACGGCATTATGGGTTCAGGACTGTATCGGACGGTGATGGTGTGTCCATCTTTGGAGGGAGCCACGTGTGGGTAGATCATTGCTCCTTGTCCAATTGTAACGACGGTCTGATTGATGCGATTCATGGGTCCACCGCAATTACGATCTCCAACAATTATATGACCCACCATGATAAGGTCATGTTATTGGGTCATAGTGATTCCTATACACAAGACAAGAACATGCAGGTCACTATAGCCTTTAATCACTTTGGAGAAGGGCTTGTTCAGAGAATGCCGAGGTGTAGGCATGGATACTTCCATGTGGTGAATAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTAGCCCTACTATCAATAGCCAGGGTAATAGATTTGTAGCACCCGATGATAGATTCAGCAAAGAGGTGACAAAGCGTGAGGAAGCGGCAGAGAGCGAATGGAAGGGGTGGAACTGGAGGTCAGAAGGTGATTTGATGGTAAATGGTGCATTTTTCACGGTGTCAGGAGCCGAAGCATCGTCAAGCTATGCCAGGGCTTCAAGTCTAAGCGCAAGGCCGTCATCACTTGTGGGAACAATAACTGGGGGTGCCGGTACACTTACCTGTCGGAAAGGTTCTCCTTGCTAG 1227 0.4971 MTTSSLLSLLLPLSLLLSISLISSRPLHDPELVVQEVNSKINASMAARRNLGYLSCGTGNPIDDCWRCDPDWENNRQRLADCAIGFGKNAVGGKGGDIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWITFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNTLVRDSPRHYGFRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFVAPDDRFSKEVTKREEAAESEWKGWNWRSEGDLMVNGAFFTVSGAEASSSYARASSLSARPSSLVGTITGGAGTLTCRKGSPC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0523 408 SUPERFAMILY Pectin lyase-like 49 402 IPR011050 -
Mibi13g0523 408 PANTHER PECTATE LYASE 18-RELATED 27 406 IPR045032 GO:0030570
Mibi13g0523 408 SMART amb_all 134 331 IPR002022 -
Mibi13g0523 408 FunFam Pectate lyase 59 401 - -
Mibi13g0523 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Mibi13g0523 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Mibi13g0523 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Mibi13g0523 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Mibi13g0523 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Mibi13g0523 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Mibi13g0523 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Mibi13g0523 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Mibi13g0523 408 Pfam Pectate lyase 144 325 IPR002022 -
Mibi13g0523 408 Gene3D - 59 401 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0523 Mibi-ChrMibi13 7114860 7116469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0523 1 408 Polysaccharide Lyase AT5G63180 79.562 0.0 667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi13g0523 13 7114860 7116469 Mibi13g0523 13 7114860 7116469 ECH
Mibi09g0805 09 11129264 11130764 Mibi13g0523 13 7114860 7116469 ECH