Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0423 ATGCTTGTACCCGGCGGACAAGATTTGTTTCTTGAGAATTCTGGAGATGAGCCGGTGCTGAATTTTGTGGAGAAAGCCGGGGAGAAAAGAATTCTGAGCTCAATGATGTCTAAAGGTAAAGAGTTCTGGACTTGGAGTTGCGCGATGCCTTTTGAAATAATGAACCAGGGGGGCATATCTGCCTCGTCCCACCTTTTTGATGACAATACCTTTTTCCCTGAGAGGAGTGTTGGATTGCAGAAGCCACAATCCTTTCATGACCATTATTTGCAAGGGAAAATAGGAGCATCTCCGCAAAGCATATCAAATCCGTCATCATCCCTAGAAACAAGTGCTAACTCTGGCTTGTCAATGTCACAAACAAGTCTGTCGGGAGAAGTCACAGAAAAGCTGCATGTTGGTGGAGGGGGCATCATTGATGTGTTGAAGTCTACCAAGGAATCGATGAATCATCACCCCAGATCATGGTCTAATGTGCATATGCAGCCAGAACCTTCACCTTATTATTTAACTGGGAGAGAGATTCTCACTGATACTACCTCTCATGAGAGCAGCCTATTCTCTAGCTCACTGTCTGAGATATTTAGCCAAAAATTGAGGTTAACTCGGAATGATATTCTGTCTCATCAACCTTTAACCATTGGTACGTTTCATGAGGAAGAGCCGTATAAATCTCTTGAAGAAATTGAGGCAGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGCTAATGAGTTAGGATACACTGTCAATGCCAGAACAACTGATGACTTTGAGGATTTTGATTTATTTAGCAGTGGTGGAGGCATGGAGCTTGAAGGAGATGAAAATCTGAGTTTGGGAAAGCAAATTGGTGGTGTGGATGTAGATTCTGGTTATTTTGGAGGTTTTAAAGGAAAACTTCCTTTTGGTGGACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGATTCTGAGCTAAAAGCTCTCTTTGAGCAATATGGAGACATCCGTACGATTTATACTTCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTACTATGACATAAGGGCAGCACAAAAGGCAATGCAAGCACTTCAGAATTGGTCATTGAGGTCTAGGAAACTTGACATTCACTTTTCAATTCCAAAGGGCAATGCTCCTGAGAAGGATATTAGCCATGGCACACTATTGCTATCTGGTCATGATTCCTCTGTTTCCAATGATGAGCTTCAACAGATTTTTGGATTTTACGGAGAAATAAAAGAAATCTACGAATCTCCAGAAGCAAATTATAAAAAAATTATTGAATTTTATGATGCACGAGCTGCAGAAGCTGCTCTTCGTGCATTAAATAGGAGCGACATTGCTGGTAAGCAGATTAAGCTTGAACCTGGCCATCCTCGGGGAACAACATGTCTGACGCATGAGTCTCACAATGGCCAAGATGATTCTGATTTTGGTCAAAGTCTCTGTGACAACTTATCACTGAGACACAAAGCAACTATGTCTTCTGGAGTAATTGCATCCAGCTGCTTAGAAAATGGACCTAATCCAGGATTTCGCTCTGCAATACAGCAACCTATCAATGCGTTAATCGATAATGCTTTCTCTCCTGTGAATTCTAACATCCACAAATCAGTGAGAGGGCCAGCTTCTGTAAAAGTGCCTGGTGTTGGCGAGTCCAGTAACTTCCTCGATGCAATGAAATTTTCCTCTGTTCCAAGATTTCAACCTCATTCCTTCCCTGATTATCATGATAGTTTTGCTAGCGGTAGTCCTTACAACTTTTCAAGCATTGTTGGCAATGTGTCTGGCAACATTGGCACTGCAGTGACAGACAACAGCTCAGATAGCAGGCACAATCAGGGAATAGGTTCAACTGGGAATCCGATGGAATTTACTGGAGCAGGAAGTGGGAACCATCAACGTCACGGGCTTTATCATGTTTGGAACAACACCAATTTGCATCAGGAACCTTCACCAAATCCCTTGCTTTGGCAGAAAACACCATCATTTGTTAACGGTGCTTGTGCTCCTGGCCTTTCGCAAATGCCCGGCTTTCCAAGAACACAGCCTCACATGCTGAGAGCATCGCATATGGACCACCATGTTGGGTCAGCTCCTGTTAATGCCTCACCCTGGGACAGGCAGCACTCTTATTTGGGAGTATCTCCTGAAACTTCTGGTTTTCGTATGGGTTCGCTAGGAAGTGCTGGTTTACCTGGTAGCTGGCAGTTGCATCCTCAAGATTTCTCTTCTCGCATGTTCCCTCATATTGGTGGGAATGGTGCAGAATTGACGCGAACTGCGGGGCAAAACTCTCCTAATCAGTTGTCACATGTTTTCCCTGGGAGACATCCCATGACTTCTATGTCCAAACTCGATCCCAATGAACGAATGAGGAATCTGTATGCCCTTCGGAAAAGTGAAGCTAATGCTAATAATGCCGATAAAAAGCAATATGAACTTGACCTAGGCTGCATAATGCGTGGGGAAGACAGCCGAACCACTCTCATGATAAAAAACATTCCCAATAAGTATACGTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTATATTTGCCAATTGACTTTAAGAACAAATGTAACGTTGGATATGCATTTATTAATATGATTGATCCTGCTCAGATAATTCCATTCCACCAGGCCTTTAATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGTAAAGCTGCACTTATTGCTCACTTCCAGAATTCAAGCCTGATGAATGAAGACAAGCGCTGCCGTCCTATTCTTTTTCACACAGATGGCCCAAATGCTGGTGATCCGGAGCCCTTCCCCATGGGTACTAATATTAGAATGAGGCCCGGAAAATCTCGGGTTAGTAGTAATAACGAGGAGAATCGTGGCCAGGGGAGTCCTTCAACTTTGGCAAGTGGAGAGGGAACTACTACTAATGCAATAGATTCTTCATTGAGTTCTTAG 3045 0.4302 MLVPGGQDLFLENSGDEPVLNFVEKAGEKRILSSMMSKGKEFWTWSCAMPFEIMNQGGISASSHLFDDNTFFPERSVGLQKPQSFHDHYLQGKIGASPQSISNPSSSLETSANSGLSMSQTSLSGEVTEKLHVGGGGIIDVLKSTKESMNHHPRSWSNVHMQPEPSPYYLTGREILTDTTSHESSLFSSSLSEIFSQKLRLTRNDILSHQPLTIGTFHEEEPYKSLEEIEADTIGNLLPDEDDLFSGVANELGYTVNARTTDDFEDFDLFSSGGGMELEGDENLSLGKQIGGVDVDSGYFGGFKGKLPFGGQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTSCKHRGFVMISYYDIRAAQKAMQALQNWSLRSRKLDIHFSIPKGNAPEKDISHGTLLLSGHDSSVSNDELQQIFGFYGEIKEIYESPEANYKKIIEFYDARAAEAALRALNRSDIAGKQIKLEPGHPRGTTCLTHESHNGQDDSDFGQSLCDNLSLRHKATMSSGVIASSCLENGPNPGFRSAIQQPINALIDNAFSPVNSNIHKSVRGPASVKVPGVGESSNFLDAMKFSSVPRFQPHSFPDYHDSFASGSPYNFSSIVGNVSGNIGTAVTDNSSDSRHNQGIGSTGNPMEFTGAGSGNHQRHGLYHVWNNTNLHQEPSPNPLLWQKTPSFVNGACAPGLSQMPGFPRTQPHMLRASHMDHHVGSAPVNASPWDRQHSYLGVSPETSGFRMGSLGSAGLPGSWQLHPQDFSSRMFPHIGGNGAELTRTAGQNSPNQLSHVFPGRHPMTSMSKLDPNERMRNLYALRKSEANANNADKKQYELDLGCIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRMRPGKSRVSSNNEENRGQGSPSTLASGEGTTTNAIDSSLSS 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0423 1014 Gene3D - 399 492 IPR012677 -
Mibi13g0423 1014 FunFam MEI2-like protein 5 isoform 2 304 398 - -
Mibi13g0423 1014 MobiDBLite consensus disorder prediction 96 129 - -
Mibi13g0423 1014 MobiDBLite consensus disorder prediction 976 1014 - -
Mibi13g0423 1014 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 381 IPR000504 GO:0003723
Mibi13g0423 1014 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 409 467 IPR000504 GO:0003723
Mibi13g0423 1014 MobiDBLite consensus disorder prediction 777 798 - -
Mibi13g0423 1014 FunFam Protein MEI2-like 1 399 493 - -
Mibi13g0423 1014 Gene3D - 304 398 IPR012677 -
Mibi13g0423 1014 MobiDBLite consensus disorder prediction 96 127 - -
Mibi13g0423 1014 SMART rrm1_1 843 919 IPR000504 GO:0003723
Mibi13g0423 1014 SMART rrm1_1 316 384 IPR000504 GO:0003723
Mibi13g0423 1014 SMART rrm1_1 401 469 IPR000504 GO:0003723
Mibi13g0423 1014 Pfam RNA recognition motif 2 841 937 IPR007201 -
Mibi13g0423 1014 PANTHER RNA RECOGNITION MOTIF-CONTAINING 122 994 - -
Mibi13g0423 1014 CDD RRM1_MEI2_like 314 389 IPR034453 -
Mibi13g0423 1014 CDD RRM3_MEI2_like 844 929 IPR034454 -
Mibi13g0423 1014 SUPERFAMILY RNA-binding domain, RBD 313 474 IPR035979 GO:0003676
Mibi13g0423 1014 MobiDBLite consensus disorder prediction 955 1014 - -
Mibi13g0423 1014 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 400 473 IPR000504 GO:0003723
Mibi13g0423 1014 SUPERFAMILY RNA-binding domain, RBD 843 928 IPR035979 GO:0003676
Mibi13g0423 1014 MobiDBLite consensus disorder prediction 467 490 - -
Mibi13g0423 1014 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 388 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0423 Mibi-ChrMibi13 4306888 4313650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0423 310 466 Eukaryotic Initiation Factors Gene Family AT3G16380 25.281 8.01e-08 54.3