Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0418 ATGACTGTGTGTTTGGTCTTTGGATGGATTCAGCTCAATGATGTTGTGAAGGCAATAGTGGCAGAATTCGCTAAGCTTGAAGATTCGCCAATGTTCCGGCAACAGCTGCAATGTTTGGAAGAAGGTGTAGAATCATTACGGGCGAGATGCCAAAAGTTCCACAAAGGATGTCGGAAGTACACGGAAGGTCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCGAGTGCACTTGAAACTTTTGGGGGAGGGCACGGTGATCCTCTTTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACTATTGCTTTGAGAGAAATTGGCACCTACAAAGAAGTTCTACGGTCACAGGTGGAGCACATGCTTAATGACCGGTTGTTACACGTTCTCAATGCTGACATCCCAGATGTAAAGGAAGCTCGAAAGCGGTTTGACAAGGCTTCCCTTGCATATGATCAGGCACGCGATAAGTTTCTGTCATTGAGAAAGAGCACTAGGATGGATGTTGCTGCTGCAATTGAAGAGGTATGTCCAACATTCCAGGAATGGCACAGTGCAAGAGATTCATTTGAAGAAGCTCGTTGCAATCTGGTCAGTGTTCTCAATAATGTTGAGGCAAAGAAGAGATTTGAATTTTTAGAGTCTGTCAGTGGGATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTACTGCATCAGATGGAACCTTTCATTACTGAGGTCTTGTCTTATGCACAGCAGTCAAGAGAAAGTTACAATTCGGATCAGATCTCTCTTAATTTAAAAATGCAAGAATACAAACGACAAATTCACCAAGAAAGTAGGTTGTCTTTAAATGGTCCCAATGGTTCTCCTGGAGAATGTGTACAGCCTTTTTCTCGGATATCTAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCATATTATTCGACAAGGATTTCTTTCAAAGCGCTCTTCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGCCGAGGAATGCTCTTCTACTATCGCAAACCATGGAACTTGGCACATAGTAGCAATCCACCATTTGTACAGAGAAACAATGCCAATGAAAATGGCCCTGGACTTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAGCGATCTGTGGCACGTCATGCAGTTAACCTGCTTACATCAACAATTAAGGTTGATGCCGATCAGTCGGATTTAAGATTTTGCTTCCGGATTATTTCACCAATTAAGAACTACACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATTGAAAAGATGACCGGAGTAATAGCTTCCTTATTGAGTGTTCAGTCAGTCGAAACGCCTCTCACAGCGGACTCTGAAAGTGGTGGATGTTCCTCTTCAAGCAAGAGTGACATGCTGGAAAACTTTCAAGAAGATATTCAATCAATGAGTCAGGAGTGTGCTTCCAAGAACATCACTTCAAATAATCATTTGCGTGAATTTAAAAGTTTTCAGCTGCATAAAGAGAGTACAAGGGGGGAAGTACCAATTGATGTTCTTAGAAGGGTTAGTGGAAATGACAGATGTGCTGATTGTGGAAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGTATTCTCATATGCATTGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCGAAAGTTCGATCACTGACACTTGACGTGAAAGTCTGGGACCCTTCTGTCCTATCAATGTTTCAGTCCCTGGGCAATCATTTTGCAAACTCAGTTTGGGAAGAAAAGTTGCATTCAGCAAGTAAAATGCAAGCTGATGATGTGACTGTTGAAAATAAATTAGTCCGTGTGAGGAAACCAGAACATGATGATTCTATTTCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTCAGAAAATCTTTGTCGATCAGATAAGGAGTAACAACCATCTCCTGTCAGTGGCACAACAGTTGTGGGAAAGTGTCTGTGCCAATGACAAGAAAGCAGCATACCGGCATATTGTGAAGTCTGATTTGGATGTCAATGCTGTCTGTGGGCAAGAGTATTTTGATGATGCTTTTGACATGCCTTCTTCAAGCAATTCAAAACCTTCAGCTAAGAGTCAATATCAGCCAATAGAGGACATACTTGATGGTTCAACTGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTGCTCTTACAACATGGTGCAGACATAAATGCTTCCGATTCAAGAGGTCGCACACCACTGCATTACTGTATTATGAGAGGAAAGAATGCTACTGCAAAATTGCTTCTTATGAGGGGGGCCAATCCACATACAGCAGATGATGAAGGCAATGCCCCTCTTAAACTTGCATCAGAATCCGCATCTATTGGCAATGACGTTCTAGCCCTCATTACAAGAAGATGA 2472 0.426 MTVCLVFGWIQLNDVVKAIVAEFAKLEDSPMFRQQLQCLEEGVESLRARCQKFHKGCRKYTEGLGEGYDGDIAFASALETFGGGHGDPLFVALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHVLNADIPDVKEARKRFDKASLAYDQARDKFLSLRKSTRMDVAAAIEEVCPTFQEWHSARDSFEEARCNLVSVLNNVEAKKRFEFLESVSGIMDAHLRYFQQGYQLLHQMEPFITEVLSYAQQSRESYNSDQISLNLKMQEYKRQIHQESRLSLNGPNGSPGECVQPFSRISNEVVDAVKESAANGKVHIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNLAHSSNPPFVQRNNANENGPGLLSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQSDLRFCFRIISPIKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVETPLTADSESGGCSSSSKSDMLENFQEDIQSMSQECASKNITSNNHLREFKSFQLHKESTRGEVPIDVLRRVSGNDRCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLSMFQSLGNHFANSVWEEKLHSASKMQADDVTVENKLVRVRKPEHDDSISLKERFIHAKYSQKIFVDQIRSNNHLLSVAQQLWESVCANDKKAAYRHIVKSDLDVNAVCGQEYFDDAFDMPSSSNSKPSAKSQYQPIEDILDGSTVLHLACLTADIAMVELLLQHGADINASDSRGRTPLHYCIMRGKNATAKLLLMRGANPHTADDEGNAPLKLASESASIGNDVLALITRR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0418 823 Gene3D Arfaptin homology (AH) domain/BAR domain 24 277 IPR027267 -
Mibi13g0418 823 PANTHER CENTAURIN/ARF 23 819 IPR045258 GO:0005096
Mibi13g0418 823 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 506 664 - -
Mibi13g0418 823 Coils Coil 138 158 - -
Mibi13g0418 823 Pfam BAR domain of APPL family 26 258 - -
Mibi13g0418 823 Pfam PH domain 319 449 IPR001849 -
Mibi13g0418 823 SMART ANK_2a 732 761 IPR002110 GO:0005515
Mibi13g0418 823 SMART ANK_2a 765 794 IPR002110 GO:0005515
Mibi13g0418 823 SUPERFAMILY PH domain-like 229 452 - -
Mibi13g0418 823 ProSiteProfiles Ankyrin repeat region circular profile. 765 797 - -
Mibi13g0418 823 ProSiteProfiles ARF GTPase-activating proteins domain profile. 524 663 IPR001164 GO:0005096
Mibi13g0418 823 SUPERFAMILY Ankyrin repeat 731 809 IPR036770 -
Mibi13g0418 823 Gene3D - 310 464 IPR011993 -
Mibi13g0418 823 ProSiteProfiles Ankyrin repeat profile. 765 797 IPR002110 GO:0005515
Mibi13g0418 823 SUPERFAMILY BAR/IMD domain-like 26 340 IPR027267 -
Mibi13g0418 823 Gene3D - 661 818 IPR036770 -
Mibi13g0418 823 ProSiteProfiles PH domain profile. 317 453 IPR001849 -
Mibi13g0418 823 Pfam Ankyrin repeats (many copies) 734 786 IPR002110 GO:0005515
Mibi13g0418 823 SUPERFAMILY ArfGap/RecO-like zinc finger 527 657 IPR037278 -
Mibi13g0418 823 CDD BAR_SFC_plant 35 241 IPR035670 -
Mibi13g0418 823 PRINTS HIV Rev interacting protein signature 578 599 IPR001164 GO:0005096
Mibi13g0418 823 PRINTS HIV Rev interacting protein signature 555 572 IPR001164 GO:0005096
Mibi13g0418 823 PRINTS HIV Rev interacting protein signature 536 555 IPR001164 GO:0005096
Mibi13g0418 823 SMART 5bar 14 244 IPR004148 GO:0005515|GO:0005737
Mibi13g0418 823 CDD ArfGap 527 650 - -
Mibi13g0418 823 Gene3D Arf GTPase activating protein 504 660 IPR038508 -
Mibi13g0418 823 ProSiteProfiles Ankyrin repeat region circular profile. 732 763 - -
Mibi13g0418 823 ProSiteProfiles Ankyrin repeat profile. 732 764 IPR002110 GO:0005515
Mibi13g0418 823 CDD PH_ACAP 320 457 - -
Mibi13g0418 823 SMART arf_gap_3 524 663 IPR001164 GO:0005096
Mibi13g0418 823 Pfam Putative GTPase activating protein for Arf 529 657 IPR001164 GO:0005096
Mibi13g0418 823 SMART PH_update 318 455 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0418 Mibi-ChrMibi13 4221568 4231289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0418 527 657 C2H2 Transcription Factor Family AT3G07940 38.931 1.46e-21 93.6