Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0417 ATGGGATCATCAGAGTGTCAGAATGCTCACTCATCATCAACTGTGAAAGGTGATTATGGCGTATTTACTTTTTTAAACTCTCATAAATTTGTAGTTTCTTCCATTTCTGGAGTGTCGGCTTCTCATAATCTGTTTTTCTCTATTCTAATAGACCCTGAAGCATTGCTTTACAAGGAGCTATGGCATGCTTGTGCTGGTCCCCTCGTTACAGTGCCTCGTGAAGGAGAACGCGTCTTCTATTTTCCTCAGGGACATATTGAGCAAGTGGAGGCGTCCACAAATCAGGTGGCTGATCAGCATATGCCTGTGCATAATCTCCCATCGAAAATCCTTTGTCGAGTGATGAACGTGTCCCTGAAGGCTGAGCCAGACACCGATGAGGTTTTTGCCCAGGTGACCCTGCTTCCAGAGTCAAATGTAAGTTCTCTGTTTCCTGTGTGTAGCATCCAAGATGAAAACGCCGTGAAGAAAGAGGCTCCGCCTTCTCCGCCGCCGCGATTTCAGGTTCATTCGTTTTGTAAAACTCTGACGGCCTCTGATACGAGTACTCATGGTGGATTTTCAGTTCTGAGACGTCATGCCGATGAATGCCTTCCTCCTCTGGACATGTCTAAGCAGCCACCTAACCAGGAGTTGGTGGCGAAGGATCTACACGGGAATGAGTGGAGATTCAGGCATATCTTTAGAGGTCAACCACGTAGACATTTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCGAAGAGGCTTGTTGCTGGTGATGCATTTATATTTTTGAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTAAGGCGTGCAATGAGACAACAGGGTAATGTTCCTTCCTCAGTGATCTCTTGTCACAGCATGCATCTTGGTGTCCTTGCAACTGCCTGGCATGCAGTTTCTACGGGGACCATGTTCACTGTGTATTACAAGCCCAGGACCAGTCCTGCTGAATTTATTGTTCCATATGAACAGTATATGGAGTCTCTAAAAGTTAATTATACTATAGGGATGCGGTTCAAAATGAGGTTTGAAGGCGAAGAGTCTCCAGAGCAGAGGTTTACTGGTACTGTTGTTGGATTTGAAGATGCTGATTCACAAAGGTGGCTTAACTCTAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAGCATTCCTCGTCCTGAGAGAGTTTCACCTTGGAAAATAGAACCTGCTCATGCTCCTCCAGCTTTAACTCCTCTTACACTAGCCAGGCCTAAAAGGCCTCGGGCTAATGCGGTTCCATCGTCACCCGATTCCTCTGTTCTCACTCGTGAAGTGTCATCCAAGGTAAGTATGGACCCTTTGCCAGCAGGTGGTTTTCCAAGGGTAATGCGAGGTCAAGAATTCTCAACCTTGAGAGGCAATTTGGCGGAAAGCTATGAATCTGATGCTGCTGAAAAGCCTGATGACAAAAATGATGCAGCTTCTACTTCAGGTACATTTGCTCCTGAGAGCTGGACATCAATAGGGAGGCATGAGCGTGCATATTCAGATTTGCTTTCAGGCGTTGGGACAAGTGGAGATCGAACCCATCTATCGTTGGTAAATCAAACTAGCCCTGTGGCTAGTCCTGGAAGAAAACATGTGTTAGGTCATGAAGGCAAGTTTAATGTGGTAGCCTGCCCAAGGTCTGTACTGCCTTCTAGTCTATCATTAAACCTCGTGGACCCTAATATGAAAGGTTCTGTACAAGACAATGATGTAACTTACCATGCTAGGCGGAATGTAAGGTATGGTGCATTTGGTGATTATCCTATGCTTCATGCTCACAAAGAAGAGCATAGGCATGGCAGCCTGTTGATGCCGCCACCTCCAATCCCAACTCAGCATGAAAGTCCTGGATCAAGAGACCTGATGCAAACACCAACAATGGCAAGATCTTACGAGACTGTTAAAGCTAAAGAAGGGGACTGTAAGCTATTTGGTGTCTCACTTATCAGTGGTCCGAGTACCCCAGAGCCTTCCACATCAAAAATAAATGCTGCATGTAAGCCAGCCGGTTGCAAGTATCTTCCATCACCACGGCCTTATACTAATGAAAGTGATTTAAAATCAGAACTATCAAGCGGATCAAAGCTGCCAGATGCTGTAGTTGCTACCAATAACCATGAAAAGCCATCACAACCATTTCAGCCACATGATAAAGGTGTTCAAGTCAAACCGTACAATGATTCTGCCAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGTAGGTCAATTGACCTTACAAAGTTCAGCAACTATGAGGAATTAGTTGCTGAATTAGATGACATGTTTGAATTTCAAGGGGAATTAAGGTCTTTGAAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGAGATGATCCGTGGCAGGAGTTCTGTGCCATGGTTCGCAAGATATATATCTACCCCAAAGAGGAAATTCAGAAAATGAGCCCGGGAGCACTAAGGTATGGGGTTGAAGAGAATCAATCGGCTAGTGAAGGCTGTGTGGATGCTAAAGAACTCCGCTCTATAGAAGCAGGAGATTCTACAAGGCCTTCCAGTTGGGAATTAAGACAAAAGAGGAATTAAGGGGAGAGAGACAGAGAGAGACCCAATCCTTCCTTTCTCTTCGGTCGACCATTTAAACGAAGTCACCTACCACCTCTGGTCGCTTCATTTCATTTCTTTCTAGCTAGCTATTCAGGAGTCATGGATAGGGTTTTGGCTCAGTCAGCTACTCTTCCCGGTTTGGTGGCTGGGAAAAGGCAGGGTCAATTTAAGGGATCACAAAAACCAAGAAGATCAGTTAAAATGATGAGTACTGCAATGGTACATGGACCAAGAATCTCAAGCTTCTCTGGACTACGTACTGTTAATCCTTTGGATACCATGTTGAGACCTGCACATGATTTTCATTCAATAGTGTCAATGTCAATTGCAACTTCTTCACATAAAGCAAGGGCCACAAGAGGTGTACCCAAGGCCATGTTTGAGCGTTTTACAGAGAAAGCTATTAAAGTAATTATGCTGGCTCAAGAGGAAGCAAGGCGGCTTGGTCACAATTTTGTTGGAACTGAGCAAATTCTGTTGGGTCTCATCGGTGAAGGCACTGGCATTGCCGCCAAGGTCCTAAAATCCATGGGAATCAACTTAAAAGATGCACGTGTGGAAGTGGAGAAGATAATTGGAAGGGGCAGTGGATTCGTTGCAGTTGAGATTCCATTCACTCCTCGGGCAAAGCGTGTTTTGGAGCTCTCACTTGAGGAAGCCCGCCAACTTGGTCACAATTATATTGGATCCGAGCACTTGCTCCTGGGTCTCCTTCGTGAGGGCGAAGGTGTCGCCGCACGTGTTCTAGAGAACCTGGGTGCTGATCCTACGAATATCCGCACGCAGGTTATTCGCATGGTTGGTGAGAGTGCAGACAGTGTAACTGCTACTGTTGGCTCTGGAAGCAGTAGCAACAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACTAAGTTAGCAGAGGAGGGAAAATTGGACCCAGTTGTGGGAAGGCAGCCACAAATTGAACGTGTCACTCAAATTCTAGGTCGTCGTACTAAAAACAATCCCTGTCTTATTGGAGAACCTGGTGTGGGGAAGACAGCTATTGCTGAGGGCCTTGCTCAGAGAATTGCTAATGGTGATGTACCCGAAACCATTGAAGGAAAGAAGGTTATAACCCTTGATATGGGTCTGCTGGTAGCTGGCACTAAATATCGTGGTGAATTTGAGGAGAGATTAAAGAAATTGATGGAGGAAATCAAACAAAGCGATGAGATTATACTATTTATTGATGAAGTACACACACTAATTGGAGCAGGAGCAGCTGAAGGAGCAATTGATGCTGCAAATATATTGAAGCCCGCACTTGCAAGAGGTGAACTGCAGTGTATAGGAGCCACAACATTGGATGAATATAGAAAACACATTGAAAAAGATCCAGCCTTGGAGAGGCGATTCCAGCCAGTTAGAGTCCCAGAACCAACTGTTGATGAAACCATACAGATTTTAAAAGGACTTAGAGAGCGTTATGAGATTCATCATAAGCTCCGTTATACCGATGAAGCCCTTATAGCTGCTGCACAGTTGTCATACCAGTATATCAGTGATCGGTTTCTGCCTGACAAAGCCATAGACTTGATTGATGAGGCTGGTTCCCGTGTCCGGCTTCAACATGCCCAGTTACCTGAAGAAGCAAGAGAGCTGGACAAGGAGGTTAGACAAATTGTGAAGGAGAAAGATGAAGCTGTTCGCAACCAGGACTTTGAAAAGGCTGGAGAGCTACGAGACAGAGAAATGGATCTTAAGGCCCAGATATCAGCACTTGTAGAGAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGAAGGTGCAGTTGTGACTGAAGTTGACATCCAACATATTGTATCCTCATGGACTGGTATTCCTGTTGAGAAAGTCTCAACAGATGAATCCGATCGCCTTCTCAAGATGGAAGAAACCTTGCACAAGCGAGTTATTGGTCAGGATGAAGCAGTAGTAGCCATTAGTCGGGCTATTCGCCGAGCTCGTGTTGGATTGAAGAATCCTAATCGTCCCATTGCTAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAGTTAGCAAAAGCCTTGGCTGCATACTACTTTGGTTCGGAAGAAGCAATGATTCGCCTTGATATGAGTGAATTTATGGAAAGGCACACTGTCTCCAAGCTTATCGGTTCCCCTCCGGGTTATGTTGGTTACACTGAAGGTGGTCAGCTGACTGAGGCAGTCCGTCGTCGACCATACACTGTTGTTCTCTTTGATGAGATTGAGAAAGCTCACCCAGACGTATTCAATATGATGCTTCAAATTCTGGAAGATGGTAGATTGACAGACAGTAAGGGTAGAACAGTAGACTTCAAGAACACGCTTCTTATAATGACATCAAATGTTGGAAGCAGTGTAATAGAGAAGGGAGGCCGCAGAATAGGATTTGACCTAGATTATGATGAAAAGGATAGTAGTTATAATCGTATCAAGAGCTTGGTGACTGAGGAGCTCAAACAGTACTTTAGACCTGAGTTTTTGAATAGGTTGGATGAAATGATTGTCTTCAGGCAACTCACTAAGCTGGAAGTGAAGGAGATTGCTGACATAATGTTGAAGGAGGTCTTTGACAGACTGAAAACCAAAGAAATTGAGCTCCAAGTGACAGAAAGATTTAGGGAAAGAGTAGTTGACGAAGGTTATAATCCTAGTTATGGAGCCAGGCCATTAAGGAGAGCTATAATGCGGCTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCAAGAGAAATCAAAGAAGGCGACTCTGTTATAGTGGATGTTGATTCTGATGGCAATGTCATTGTCCTCAACGGTGGCAGTGGTGCCCCAGAATCCTTACCTGAGGCTCTTCCCGTATAG 5517 0.4512 MGSSECQNAHSSSTVKGDYGVFTFLNSHKFVVSSISGVSASHNLFFSILIDPEALLYKELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVHNLPSKILCRVMNVSLKAEPDTDEVFAQVTLLPESNVSSLFPVCSIQDENAVKKEAPPSPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPNQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISCHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPAEFIVPYEQYMESLKVNYTIGMRFKMRFEGEESPEQRFTGTVVGFEDADSQRWLNSKWRCLKVRWDETSSIPRPERVSPWKIEPAHAPPALTPLTLARPKRPRANAVPSSPDSSVLTREVSSKVSMDPLPAGGFPRVMRGQEFSTLRGNLAESYESDAAEKPDDKNDAASTSGTFAPESWTSIGRHERAYSDLLSGVGTSGDRTHLSLVNQTSPVASPGRKHVLGHEGKFNVVACPRSVLPSSLSLNLVDPNMKGSVQDNDVTYHARRNVRYGAFGDYPMLHAHKEEHRHGSLLMPPPPIPTQHESPGSRDLMQTPTMARSYETVKAKEGDCKLFGVSLISGPSTPEPSTSKINAACKPAGCKYLPSPRPYTNESDLKSELSSGSKLPDAVVATNNHEKPSQPFQPHDKGVQVKPYNDSARSCTKVHKKGIALGRSIDLTKFSNYEELVAELDDMFEFQGELRSLKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGALRYGVEENQSASEGCVDAKELRSIEAGDSTRPSSWELRQKRNXGERDRERPNPSFLFGRPFKRSHLPPLVASFHFFLASYSGVMDRVLAQSATLPGLVAGKRQGQFKGSQKPRRSVKMMSTAMVHGPRISSFSGLRTVNPLDTMLRPAHDFHSIVSMSIATSSHKARATRGVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVRVPEPTVDETIQILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKEKDEAVRNQDFEKAGELRDREMDLKAQISALVEKGKEMSKAESEAGDEGAVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVVAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKEIELQVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGGSGAPESLPEALPV 1838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0417 1838 CDD AAA 1191 1349 - -
Mibi13g0417 1838 SMART AAA_5 1208 1348 IPR003593 -
Mibi13g0417 1838 SMART AAA_5 1551 1732 IPR003593 -
Mibi13g0417 1838 Gene3D - 335 406 - -
Mibi13g0417 1838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1500 1818 IPR027417 -
Mibi13g0417 1838 Gene3D UVR domain 1417 1481 - -
Mibi13g0417 1838 Gene3D - 735 828 - -
Mibi13g0417 1838 FunFam Auxin response factor 335 407 - -
Mibi13g0417 1838 Pfam ATPase family associated with various cellular activities (AAA) 1213 1329 IPR003959 GO:0005524|GO:0016887
Mibi13g0417 1838 Pfam AUX/IAA family 736 826 IPR033389 -
Mibi13g0417 1838 Pfam C-terminal, D2-small domain, of ClpB protein 1731 1811 IPR019489 -
Mibi13g0417 1838 Coils Coil 1421 1441 - -
Mibi13g0417 1838 ProSiteProfiles UVR domain profile. 1425 1460 IPR001943 GO:0005515
Mibi13g0417 1838 ProSiteProfiles Clp repeat (R) domain profile. 1008 1150 IPR004176 -
Mibi13g0417 1838 Gene3D - 1503 1729 IPR027417 -
Mibi13g0417 1838 MobiDBLite consensus disorder prediction 865 884 - -
Mibi13g0417 1838 FunFam ATP-dependent Clp protease subunit 1504 1729 - -
Mibi13g0417 1838 ProSitePatterns Chaperonins clpA/B signature 2. 1585 1603 IPR028299 -
Mibi13g0417 1838 ProSiteProfiles PB1 domain profile. 739 821 IPR000270 GO:0005515
Mibi13g0417 1838 FunFam Auxin response factor 734 828 - -
Mibi13g0417 1838 MobiDBLite consensus disorder prediction 608 631 - -
Mibi13g0417 1838 MobiDBLite consensus disorder prediction 686 705 - -
Mibi13g0417 1838 FunFam ATP-dependent Clp protease ATP-binding subunit 1352 1438 - -
Mibi13g0417 1838 Pfam Clp amino terminal domain, pathogenicity island component 1022 1074 IPR004176 -
Mibi13g0417 1838 Pfam Clp amino terminal domain, pathogenicity island component 1098 1149 IPR004176 -
Mibi13g0417 1838 SUPERFAMILY Double Clp-N motif 1009 1150 IPR036628 -
Mibi13g0417 1838 SUPERFAMILY CAD & PB1 domains 740 816 - -
Mibi13g0417 1838 Coils Coil 1262 1282 - -
Mibi13g0417 1838 SMART ClpB_D2_small_2 1731 1821 IPR019489 -
Mibi13g0417 1838 Gene3D - 1731 1826 - -
Mibi13g0417 1838 CDD B3_DNA 170 272 IPR003340 GO:0003677
Mibi13g0417 1838 FunFam Auxin response factor 170 274 - -
Mibi13g0417 1838 Gene3D - 1007 1156 IPR036628 -
Mibi13g0417 1838 MobiDBLite consensus disorder prediction 466 498 - -
Mibi13g0417 1838 ProSitePatterns Chaperonins clpA/B signature 1. 1303 1315 IPR018368 GO:0005524
Mibi13g0417 1838 Gene3D - 1353 1497 - -
Mibi13g0417 1838 Gene3D - 169 274 IPR015300 -
Mibi13g0417 1838 SMART B3_2 172 274 IPR003340 GO:0003677
Mibi13g0417 1838 Pfam AAA domain (Cdc48 subfamily) 1550 1724 IPR003959 GO:0005524|GO:0016887
Mibi13g0417 1838 MobiDBLite consensus disorder prediction 860 885 - -
Mibi13g0417 1838 FunFam ATP-dependent chaperone ClpB 1731 1823 - -
Mibi13g0417 1838 ProSiteProfiles B3 DNA-binding domain profile. 172 274 IPR003340 GO:0003677
Mibi13g0417 1838 Pfam Auxin response factor 298 380 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mibi13g0417 1838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1168 1445 IPR027417 -
Mibi13g0417 1838 SUPERFAMILY DNA-binding pseudobarrel domain 168 301 IPR015300 -
Mibi13g0417 1838 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 1007 1155 - -
Mibi13g0417 1838 Gene3D - 1158 1351 IPR027417 -
Mibi13g0417 1838 CDD AAA 1525 1673 - -
Mibi13g0417 1838 Pfam B3 DNA binding domain 172 273 IPR003340 GO:0003677
Mibi13g0417 1838 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1600 1618 IPR001270 GO:0005524
Mibi13g0417 1838 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1555 1573 IPR001270 GO:0005524
Mibi13g0417 1838 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1629 1647 IPR001270 GO:0005524
Mibi13g0417 1838 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1662 1676 IPR001270 GO:0005524
Mibi13g0417 1838 PANTHER ATP-DEPENDENT CLP PROTEASE 1012 1818 - -
Mibi13g0417 1838 FunFam Chaperone clpB 1, putative 1159 1351 - -
Mibi13g0417 1838 Pfam AAA lid domain 1351 1452 IPR041546 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0417 Mibi-ChrMibi13 4190426 4203264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0417 50 854 B3 DNA Binding Superfamily AT5G62000 61.864 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mibi13g0417 AAA_2 6.9e-55 CL0023