Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0409 ATGGCAGCTTTTTCATTCCAATACCACCCTTTCCTTGTTGACTCTCCATTTTTCTATAGTGCTTCCATTAAGATGATGTCACCTTTCAACGAGTCTTTTCAGGCTCAGGCTCAGGCTCAGGCTAATCCTGTTTCTCAGTTTAACGATACATCTTTAGAGAACTGCTTTGTTGATCAAGGCTCCAAGTTTAACATGAGTGATAATGAGCCTTCTTCGGTGACCAAAAACCAGAGCCCTGAGACATCTCTGGTGTTGGATAAGCTTGAACCTGGTGAGCAAGTTACCCAGAAGCTGACTCTTATGGAGAAGAAAAGAAGAAACAGGAATCGTTCTTCTTTGAGTATACGTCCTCAATCTAAGGAAGGTACAGGAGAGAGAAACAAGAGACAAAGGAAGAGCAATAATGGTGAGGTGAAGGATGGAGATAAGGCAAAAGATGAGAAGAAGAAGAATCAGAAGAAGGGTCATGAAGAACCTCCAACAGGTTACATCCACGTAAGAGCAAGAAGGGGTCAGGCAACTGATAGCCACAGCCTAGCTGAAAGGGCAAGAAGAGAGAAGATAAGTGAGAGGATGAAGATGTTACAGCGACTTGTTCCAGGTTGTGATAAGGTGTCTGGAAAAGCCCTCATGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTATATGACTTCACAATGGACCTTGACTCTCTCATGGTCAGACCAGAGAAATCAAATTGCATAGCATCACCACCACTTCCATCTGTGCCACAATGCAGCCTCAACCAGTCCACAACTTTTGCTGATACGACCACCGTTACCACCACGGCTACCGCCGGCTTTCCTCCGGCTAATGACTATCCTTTGGACAATTCCGCTTCTTTTTGCCTTCAAGGACAGAGGTCTAATGTCATGTCTGAGGACACAGGTAGTCAATTCTGGGACATAGAAGACCCACGCCACAAGTTTCTTCATCCATATGGGATGAACAATAGCTTATGTTTCTTTCATTAA 1050 0.4362 MAAFSFQYHPFLVDSPFFYSASIKMMSPFNESFQAQAQAQANPVSQFNDTSLENCFVDQGSKFNMSDNEPSSVTKNQSPETSLVLDKLEPGEQVTQKLTLMEKKRRNRNRSSLSIRPQSKEGTGERNKRQRKSNNGEVKDGDKAKDEKKKNQKKGHEEPPTGYIHVRARRGQATDSHSLAERARREKISERMKMLQRLVPGCDKVSGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMLYDFTMDLDSLMVRPEKSNCIASPPLPSVPQCSLNQSTTFADTTTVTTTATAGFPPANDYPLDNSASFCLQGQRSNVMSEDTGSQFWDIEDPRHKFLHPYGMNNSLCFFH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0409 349 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Mibi13g0409 349 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 42 270 IPR024097 GO:0006355
Mibi13g0409 349 SMART finulus 178 228 IPR011598 GO:0046983
Mibi13g0409 349 Gene3D - 169 242 IPR036638 GO:0046983
Mibi13g0409 349 MobiDBLite consensus disorder prediction 121 184 - -
Mibi13g0409 349 MobiDBLite consensus disorder prediction 61 83 - -
Mibi13g0409 349 CDD bHLH_AtBPE_like 162 247 - -
Mibi13g0409 349 MobiDBLite consensus disorder prediction 61 184 - -
Mibi13g0409 349 FunFam Basic helix-loop-helix transcription factor 169 242 - -
Mibi13g0409 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 239 IPR036638 GO:0046983
Mibi13g0409 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0409 Mibi-ChrMibi13 4128431 4130182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0409 113 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 66.207 4.93e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi13g0409 HLH 2.4e-06 No_clan