Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0404 ATGGGCTGTGTCCTTGGAACGGCGAAGGATGATCCTGAAACAAGTGTGGGCCCCCGTCGTGACCAAAACTCTGCTTCTTCTGACGGACGTAATAATGCCGTTGTTACCGCTAAGCTGAAGGAGAAGAAGAAACAAAGGGCTCTTCAACACTGCGGCGATTTTGTTTATAATCTCGCCGGACCACAACGCCGGAAACCTAGTCCCTATCCGTACGATCAAAACCAACAGGGATGGCCATCTTGGTTGATGGCTGTCGCTGGTGACGCTATTCGAGATTGGACTCCTCGCCGTCCCAACACTTTCGAGAAACTTGCCAAGATTGGACAGGGGACGTATAGCAATGTGTATAAAGCGAGGGACCTTCTTACTGGGAAGATAGTGGCTTTAAAGAAGGTTAGGTTTGATAATTTGGAGCCGGAGAGTGTGAAGTTTATGGCGAGGGAGATTCTTGTTTTGAGGCGGCTTGATCACCCAAATATAGTGAAACTTGAGGGATTGGTTACTTCTAGAATGTCATGCAGTCTTTACTTGATATTGGAGTATATGGAACATGATCTTACTGGGCTTGCTGCTGGCCAAGGTGTTAAGTTCACTGAGCCTCAAGTGAAATGCTATATGAGGCAATTACTCTCTGGCCTTGAGCATTGCCACAGCAAAGGTGTCTTGCACCGTGATATCAAGGGTTCAAATCTGCTCATCGATGATGAAGGAATGCTGAAAATTGCAGATTTTGGATTGGCAACTTTCTATGATCCTGAGCACAAGCAACCCTTGACAAGTAGAGTTGTCACGCTTTGGTATCGTGCTCCTGAGCTTCTTCTTGGGGCTACACACTATGGTGTTGGTATTGACCTCTGGAGTGCTGGCTGCATCTTGGGAGAGCTGCTTACTGGGAAGCCGATCATGCCTGGCCGAACAGAGGTTGAACAACTGCACAAAATATTTAAATTATGTGGTTCTCCATCTGATGATTACTGGAAGAAATATAAATTGCCAAATGCTACACTCTTCAAGCCTCAGCAGCCATATAAAAGATGCATTTTAGAAACCTTCAAGGATTTCCCTCCTTCTTCCGTACATCTAATATGTACTCTTCTTTCAATAGATCCCGATGATCGTGGCACTGCCTTGGCTGCTCTAAATAGTGATTTTTTTACCACCGAGCCCTATGCTTGTGAACCATCAAATTTGCCAAAATATCCTCCCAGCAAAGAACTGGATATAAAACTGAGAGATGAAGAGACTAGAAGGCGAAAAGCTCTGAATGGGAAAAGTAATGCAGTTGGTGGTGCCAAAAGAGTCCGAATACGTGAGCGTGGTCGGGCCATTGCTGCCCCAGAAGCCAATGCAGAGATCCAATCAAACTTAGATAGGTGGAGAGTTGTGACACATGCAAATGCAAAAAGCAAGAGTGAGAAATTCCCGCCTCCTCATCAAGACGGAGCCGTCGGATATCCATTGGATGCATCTCACAAGGGACCTGTTTCATTTGGTGCCACTGATGATGCTTCCTTTAGCTCCGAAGTATTAAATTCAAAACCTGCGGGATCTGTAGAAAGTCATGCTGCATCAGGACCTCACATAGGTAAGAAAACAAAGAAAACAGATTCTTCATCATGGAAATTGATGCGTCCATTCAAGTAG 1644 0.4538 MGCVLGTAKDDPETSVGPRRDQNSASSDGRNNAVVTAKLKEKKKQRALQHCGDFVYNLAGPQRRKPSPYPYDQNQQGWPSWLMAVAGDAIRDWTPRRPNTFEKLAKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNIVKLEGLVTSRMSCSLYLILEYMEHDLTGLAAGQGVKFTEPQVKCYMRQLLSGLEHCHSKGVLHRDIKGSNLLIDDEGMLKIADFGLATFYDPEHKQPLTSRVVTLWYRAPELLLGATHYGVGIDLWSAGCILGELLTGKPIMPGRTEVEQLHKIFKLCGSPSDDYWKKYKLPNATLFKPQQPYKRCILETFKDFPPSSVHLICTLLSIDPDDRGTALAALNSDFFTTEPYACEPSNLPKYPPSKELDIKLRDEETRRRKALNGKSNAVGGAKRVRIRERGRAIAAPEANAEIQSNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDASHKGPVSFGATDDASFSSEVLNSKPAGSVESHAASGPHIGKKTKKTDSSSWKLMRPFK 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0404 547 FunFam probable serine/threonine-protein kinase At1g54610 88 183 - -
Mibi13g0404 547 CDD STKc_CDK9_like 101 385 - -
Mibi13g0404 547 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g0404 547 MobiDBLite consensus disorder prediction 467 547 - -
Mibi13g0404 547 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g0404 547 MobiDBLite consensus disorder prediction 1 33 - -
Mibi13g0404 547 PANTHER CELL DIVISION PROTEIN KINASE 100 389 - -
Mibi13g0404 547 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Mibi13g0404 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Mibi13g0404 547 FunFam probable serine/threonine-protein kinase At1g54610 184 425 - -
Mibi13g0404 547 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g0404 547 SUPERFAMILY Protein kinase-like (PK-like) 94 390 IPR011009 -
Mibi13g0404 547 MobiDBLite consensus disorder prediction 500 518 - -
Mibi13g0404 547 MobiDBLite consensus disorder prediction 18 33 - -
Mibi13g0404 547 Gene3D Transferase(Phosphotransferase) domain 1 184 425 - -
Mibi13g0404 547 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0404 Mibi-ChrMibi13 4085093 4088715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0404 93 419 Core Cell Cycle Gene Families AT5G10270 49.563 3.18e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mibi13g0404 Pkinase 6.4e-69 CL0016