Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0371 ATGGCGGCAGTAAAATGTGTCTTAATGTCGTGCAAAGACCGGGAAAGGAAACAGTACCCCCATACCGCAAAAGCGAGAGATTCAGGAAGTCCGAAGCAGAATCGAATGAAGAAAGCAAGCACACCCACTTTTCCATCAAAACCCTTATGGGTTCTTCCCTATCGAACCCAAAATCTCACTGACCTTTACACATTGGGAAGGAAATTGGGTCAGGGTCAATTTGGAACCACCTATTTCTGCACAGAGAAGTCCACTGGTCGTACATATGCCTGTAAATCAATCCCTAAGCGTAAGCTAATCTGCCAAGAGGATTACGATGATGTTTGGAGGGAGATTCAGATCATGCATCATTTGTCTGAGAATCCCAACGTTGTCAGAATTCATGGTACTTATGAGGACTTGTACTCTGTTCACTTGGTCATGGAAATATGTGAAGGTGGAGAGTTGTTTGATAGGATTGTGAAGAAAGGGCATTACAGTGAGAGGCAAGCGGCTACGTTGATCAGAACTATTGTTGAGGTTGTTCAAGCTTGTCATTCTCTTGGTGTCATGCATAGAGACCTTAAGCCTGAAAACTTCTTGTTTGATAGTGTTGAAGAGGATGCTAAACTTAAAGCTACTGATTTTGGGTTGTCTGTTTTCTACAAGCCAGGTGAAACTTTTTCTGATGTTGTTGGGAGCCCATACTATGTTGCACCAGAGGTGCTACGCAAGCATTATGGACCCGAGTCAGATGTGTGGAGTGCTGGGGTTATTTTGTACATCTTATTGAGTGGGGTGCCGCCTTTTTGGGCTGAAAATGAAATAGGGATTTTCCGACAGATTTTACAAGGAAAACTTGATTTTCAGTCAGAACCTTGGCCTAACATCTCAGAAAGTGCCAAGGATCTCATTAGAAAAATGCTTGATCAAAATCCGAAGAAGAGGCTTACAGCCCATCAAGTACTCAGTCACCCATGGATTGTTGATGACAATATTGCACCTGATAAACCCCTTGACTCTGCTGTTCTATCACGCCTGAAACAGTTCTCTGCAATGAATAAGCTTAAAAAGATGGCTTTACGTGTTATTGCTGAGAGGCTCTCTGAGGAAGAAATTGGTGGGTTAAAGGAGTTATTCAAGATGATTGACACAGACAACAGCGGAACCATAACTTTTGATGAGTTAAAAGATGGTTTAAAGCGAGTGGGGTCTGAACTTATGGAGTCTGAAATCAGGGATCTCATGGAGGCGGCGGATATTGATAATAGTGGAACAATTGACTATGGTGAATTCATTGCTGCAACTATCCACCTAAATAAGCTGGAGAGAGAGGAAAACCTGTTGTCTGCTTTTTCATATTTTGATAAAGACGGTAGTGGTTACATAACCATCGATGAGATTCAACAAGCCTGCAAGGACTTTGGTTTAGGCGATGTCCATATCGATGAAATGATCAAAGAAATTGATCAAGACAATGATGGACAAATAGATTATGGGGAATTTGCTGCAATGATGAGGATGGGCAATGGTGGGATTGGAAGGCGAACCATGAGAAACACTCTAAATTTCAGGGATGCTCTGGGATTGATAGGCACTGGCTCTAATGACATTATGAAAGATTAG 1605 0.4218 MAAVKCVLMSCKDRERKQYPHTAKARDSGSPKQNRMKKASTPTFPSKPLWVLPYRTQNLTDLYTLGRKLGQGQFGTTYFCTEKSTGRTYACKSIPKRKLICQEDYDDVWREIQIMHHLSENPNVVRIHGTYEDLYSVHLVMEICEGGELFDRIVKKGHYSERQAATLIRTIVEVVQACHSLGVMHRDLKPENFLFDSVEEDAKLKATDFGLSVFYKPGETFSDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAENEIGIFRQILQGKLDFQSEPWPNISESAKDLIRKMLDQNPKKRLTAHQVLSHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIRDLMEAADIDNSGTIDYGEFIAATIHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKDFGLGDVHIDEMIKEIDQDNDGQIDYGEFAAMMRMGNGGIGRRTMRNTLNFRDALGLIGTGSNDIMKD 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0371 534 CDD EFh 441 500 IPR002048 GO:0005509
Mibi13g0371 534 ProSiteProfiles EF-hand calcium-binding domain profile. 474 505 IPR002048 GO:0005509
Mibi13g0371 534 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Mibi13g0371 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Mibi13g0371 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 495 - -
Mibi13g0371 534 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Mibi13g0371 534 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Mibi13g0371 534 FunFam calcium-dependent protein kinase SK5 358 430 - -
Mibi13g0371 534 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g0371 534 MobiDBLite consensus disorder prediction 17 44 - -
Mibi13g0371 534 Gene3D - 434 534 - -
Mibi13g0371 534 Gene3D Transferase(Phosphotransferase) domain 1 150 361 - -
Mibi13g0371 534 Gene3D Phosphorylase Kinase; domain 1 65 149 - -
Mibi13g0371 534 Pfam EF-hand domain pair 439 500 IPR002048 GO:0005509
Mibi13g0371 534 Pfam EF-hand domain pair 369 429 IPR002048 GO:0005509
Mibi13g0371 534 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Mibi13g0371 534 FunFam Calcium-dependent protein kinase SK5 434 529 - -
Mibi13g0371 534 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Mibi13g0371 534 CDD EFh 369 428 IPR002048 GO:0005509
Mibi13g0371 534 SMART efh_1 474 502 IPR002048 GO:0005509
Mibi13g0371 534 SMART efh_1 368 396 IPR002048 GO:0005509
Mibi13g0371 534 SMART efh_1 440 468 IPR002048 GO:0005509
Mibi13g0371 534 SMART efh_1 404 432 IPR002048 GO:0005509
Mibi13g0371 534 CDD STKc_CAMK 63 320 - -
Mibi13g0371 534 FunFam Calcium-dependent protein kinase 1 65 148 - -
Mibi13g0371 534 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Mibi13g0371 534 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g0371 534 SUPERFAMILY Protein kinase-like (PK-like) 37 344 IPR011009 -
Mibi13g0371 534 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Mibi13g0371 534 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Mibi13g0371 534 Gene3D - 362 433 - -
Mibi13g0371 534 MobiDBLite consensus disorder prediction 17 33 - -
Mibi13g0371 534 FunFam Calcium-dependent protein kinase SK5 149 333 - -
Mibi13g0371 534 SUPERFAMILY EF-hand 360 500 IPR011992 -
Mibi13g0371 534 Pfam Protein kinase domain 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0371 Mibi-ChrMibi13 3751238 3754706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0371 36 530 EF-hand Containing Proteins AT1G35670 77.108 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mibi13g0371 Pkinase 4.7e-77 CL0016