Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0367 ATGGCAAGATCAAAGGTTCAGCCCCCATACTCTGCTGGTAGACGCAGCTCGAAGCGAAAGCGCAAACAAGAGGAAGGAGTAGATAATGCGACGCCAGCTGTTTGTGAACCGTTGGTTCCCAAACCTCAAAAGTCTCGTCAACATCTTTTGACTGAAGTTGTGTCGCAAGTCACTATTCTCAACTCCTCCTTATCATCGTCTCCCTCCGATCGCCTCGCCGTCAAGCATGCTGCCTATGCTCTCGCTGAACTCGCCAAGAATGAGGTTGACTATACGTTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTCAATGTGATAATGTAGAACTGCAAAGTGCAGCTGCAATGGCCTTAAAATATCTTGCAATTCGCAATAATTTGAACAAAGACCAGGTGGGGGTGACCTTGCATGGCTACTTGGCTCAAGTGATTGGACTTTTGGCCATTCATTCTGAAAGCAGAACGAAGAGTATTATTCAAGCTGGTGCTCTACAACCCGTAATGGGATTGCTTAGATCTTGCTCTTTCAAGGATAAAGTGGAAGCAGCTGGTTTAATTGGTATATTTGCTATGTCAGATTCTGATTGCAAGGTTCACTTCGCCCAAAGAGGGGCTATCCAGCCACTGGTTGACATGCTTAAGTCCCCAAATACACTACATTGGGAGCCACCAGCTTTCGCACTGTCGAAACTTGCTCAGGTGCTGAAACAACTTTTGTATCTTATGCGTTCTGAAGAAAAGACTGTTCAAAGACATGCGGTTCTAGCACTTGCGCATTTATGTGCCCCTGGTGATGGAAAACTTACTTTTGTTGATAACAACGGACTTGAGTTGCTGCTAGATCTTCTAGCAACTAGAAGCCTAAAACAGAAACGCAACGCTTCAATGGCACTTCACTCGTTGGCCGTCAAAATAACACATATCTCTCATGTTGCCGCTCCTCCATCACTGACTCCTGAGGTGAACTTCTATTCATATCTATGCAAACGTTTCTATGCTCATCGAAGTTGTTTACTTGCTTCCTCAGATGTGTTTCGAGCGATGTTGGATGGTGTTTACTTGGAAAAAGAAGCTACACATATAAAGATTCCTAACATTAAATGTGATGTCTTTGAATTGATGATGAGATTTATTTACACAGGAGCTGTTGATGTTAATCCAGTTGTTGCTTCTGATCTCTTAAGGGTTGCTGATCAGTATCTTCTAGATGGTCTTAAACGTTTGTGTGAATTGACAATAATTCAGGTAGGGTAA 1263 0.4347 MARSKVQPPYSAGRRSSKRKRKQEEGVDNATPAVCEPLVPKPQKSRQHLLTEVVSQVTILNSSLSSSPSDRLAVKHAAYALAELAKNEVDYTFRMEGGIPPLVELLQCDNVELQSAAAMALKYLAIRNNLNKDQVGVTLHGYLAQVIGLLAIHSESRTKSIIQAGALQPVMGLLRSCSFKDKVEAAGLIGIFAMSDSDCKVHFAQRGAIQPLVDMLKSPNTLHWEPPAFALSKLAQVLKQLLYLMRSEEKTVQRHAVLALAHLCAPGDGKLTFVDNNGLELLLDLLATRSLKQKRNASMALHSLAVKITHISHVAAPPSLTPEVNFYSYLCKRFYAHRSCLLASSDVFRAMLDGVYLEKEATHIKIPNIKCDVFELMMRFIYTGAVDVNPVVASDLLRVADQYLLDGLKRLCELTIIQVG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0367 420 SMART arm_5 266 306 IPR000225 GO:0005515
Mibi13g0367 420 SMART arm_5 86 126 IPR000225 GO:0005515
Mibi13g0367 420 SMART arm_5 196 265 IPR000225 GO:0005515
Mibi13g0367 420 SMART arm_5 154 194 IPR000225 GO:0005515
Mibi13g0367 420 MobiDBLite consensus disorder prediction 1 40 - -
Mibi13g0367 420 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 9 88 IPR044282 -
Mibi13g0367 420 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 97 128 IPR000225 GO:0005515
Mibi13g0367 420 SUPERFAMILY ARM repeat 68 309 IPR016024 -
Mibi13g0367 420 Gene3D Potassium Channel Kv1.1; Chain A 323 419 IPR011333 -
Mibi13g0367 420 Pfam Armadillo/beta-catenin-like repeat 96 125 IPR000225 GO:0005515
Mibi13g0367 420 Pfam BTB/POZ domain 332 417 IPR000210 GO:0005515
Mibi13g0367 420 Gene3D - 51 138 IPR011989 -
Mibi13g0367 420 ProSiteProfiles BTB domain profile. 322 390 IPR000210 GO:0005515
Mibi13g0367 420 SUPERFAMILY POZ domain 332 417 IPR011333 -
Mibi13g0367 420 Gene3D - 139 317 IPR011989 -
Mibi13g0367 420 SMART BTB_4 324 420 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0367 Mibi-ChrMibi13 3691149 3697439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0367 38 307 U-box Gene Family AT2G23140 28.070 8.21e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mibi13g0367 BTB 3.6e-18 CL0033