Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0327 ATGAATAACGGCTCTCGTAAACGACCGCCGCCGCCGCCGTCGCAGCCGTCACCGGCTAACCAGCCTAAGAGCCAAGCATTCTCACAGGAAGAAGAGTTCGTCGATGAGGATGTTTTCCTCGACGAAACCCTTATGTCTGAAGATGAAGAGTCCCTCATCCTCCGTGACATTGAGCAACGCCAGGCTCTCGCTTCTCGTATTTCCAAATGGACCCGTCCGAATCTCTCATCCGAGTATCTCTCACAATCTTGTAGTGTTATTTTTCAACAGCTGGAGATTGATTATGTCATTGGAGAGAGTCATAAAGAGTTGCTGCCTATTTCATCTGGATCAGCTGCTATTATTAGAATATTTGGAGTTACGAAGGAAGGACATAGCGTTTGCTGCAATGTTCATGGATTTGAGCCATATTTTTACATCAGTTGCCCTCCTGGAATGAGATCCGATGATATTTCTGGTTTCCATAAAATCCTCGAGGGGAGGATGAAGGAGTCCAATAGAAACAGTAAAGTGCCACAATTTGTTCGTCGTATAGAAATGGTGCAGAGAAAGAGTATTATGCACTACCAGCAGCTGGACTCCCAGCCATTTTTGAAAATTGTAGTTGCACTGCCTACAATGGTTGCTAGTTGTCGAGGTATTCTTGACAGAGGCATTCAGATTGATGGCCTTGGAATGAAGAGCTTTATGACTTATGAAAGCAATGTTCTGTTTGCCCTTCGGTTCATGATTGATTGCAATGTGGTTGGTGGAAATTGGATTGAGGTACCTGCTGGAAAATACAAGAAGACAGCAAGGAACTTGTCTTATTGCCAGTTAGAGTATTCGGAGTTGATTAGCCATGCACCAGAAGGGGATTATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGATATTGAGTGTGCTGGTCGCAAAGGTCATTTTCCTGAACCTACACACGATCCTGTTATCCAGATTGCCAACTTGGTCACATTGCAAGGAGAAGATCAACCATTTATTCGTAACGTCATGACTCTTAAATCATGTTCACCTATAGTTGGCACTGATGTAATGTCATTTGATACCGAAAGAGAAGTCCTGCTAGCATGGAGGGATTTTATCCGTGAAGTGGACCCTGATATTATAATTGGATATAACATTTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTGATGCCCTGAAAATAGCAGAATTTCCTATTCTTGGACGCATCAGGAGCAGTCGAGTTCGAGTGAAAGATACAACTTTCTCATCAAGACAGCTTGGGACTAGGGAAAGCAAAGAGGTTACCATAGAAGGGAGAGTTCAGTTTGACTTGCTCCAGGCTATACAGCGAGACTACAAACTAAGTTCTTATTCATTGAATTCTGTTTCAGCACATTTTCTCTCTGAGCAGAAAGAGGATGTTCACCATTCAATTATATCCGATCTTCAGAATGGAAATGCCGACACTAGGAGACGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAACGACTGTTGGATAAATTGATGTTTATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCAATTTCTTTTTTACTTGCTAGAGGGCAAAGCATTAAGGTACTGTCTCAGCTTCTTAGGAAGGCAAAACAAAAGAACTTGGTTATTCCTAATGTCAAGCAGGCTGGGTCAGACCAAGGTACATATGAAGGTGCCACTGTATTGGAAGCAAGAGCTGGATTCTATGAAAAGCCCATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCATATAATCTATGCTACTGCTCTCTGGTGACCCCAGAAGACGTTCGCAAGCTTAACCTTCCTCCAGAGTCTGTGAACAAAACTCCATCTGGTGAAACGTTTGTTAAATCAAATTTACAGAAGGGAATACTTCCTGAAATTCTTGATGAGTTATTGACAGCCCGTCGGAGGGCAAAAGCAGACTTGAAGGAGGCAAAAGATCCTCTTGAGAAGGCTGTGCTGGATGGTCGACAGCTGGCTCTAAAGGTCAGTGCTAATTCTGTATATGGGTTTACAGGGGCTACTGTTGGCCAGTTACCTTGCATAGAGATATCTTCAAGTGTAACAAGCTATGGTCGGCAAATGATTGAGCACACAAAAAAACTTGTGGAAGATAAATTTACAATACTCAATGGTTATGAGAACAATGCTGAGGTCATATATGGGGACACTGATTCAGTCATGGTACAATTCGGTGTTTCCTCTGTAGAAGATGCTATGAAATTAGGGAGGGAGGCTGCTGAATACATAAGCGGAACTTTCATTAAACCCATCAAACTAGAGTTTGAAAAGGTTTACTATCCATATCTCCTAATTAGCAAGAAAAGATATGCTGGTTTATTTTGGACAAAACCAGACAAATTTGACAAGATGGACACTAAAGGAATTGAGACAGTTCGGAGAGATAATTGTTTATTGGTAAAGAACCTGGTCAATGACTGCCTACACAAAATTCTCATCGACAGGGATGTCCCTGGGGCAGTCCAGCATGTAAAGAGTGCAATTTCAGATCTACTCATGAACCGCATGGATTTGTCACTTCTGGTCATTACAAAGGGATTGACCAAGACAGGAGATGATTATGAAGTGAAAGCAGCTCACGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGCGATAGAGTTCCTTATGTCATAATTAAAGCTGCAAAAGGTGCCAAGGCTTATGAAAAGTCAGAGGATCCGATCTATGTGCTGGAGAACAACATACCAATAGACCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGGATTTTTGAGCCTATTTTGAAGAATGCTAGCAAGGAGCTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACGCCATCAAACAGTGGCATAATGAAATTTGCCAAGAAACAGCTTACTTGCATTGGTTGCAAAGCATTACTTAGCAATGGAGATCGCACTCTCTGCTCGCATTGCAAGGGAAGGGAAGCTGAGCTCTACTGCAAAACGGTTGCTCAAGTCTCTGATCTAGAGACGCTTTTTGGGAAGCTTTGGACGCAGTGTCAAGAATGCCAAGGTTCCCTTCATCAGGATGTTCTTTGCACAAGTCGAGATTGCCCGATTTTTTATAGAAGGAAAAAGGCACAGAAAGATATGGCTGAAGCAAAGGTGCAATTGGACCGGTGGAGCTTCTAG 3255 0.4246 MNNGSRKRPPPPPSQPSPANQPKSQAFSQEEEFVDEDVFLDETLMSEDEESLILRDIEQRQALASRISKWTRPNLSSEYLSQSCSVIFQQLEIDYVIGESHKELLPISSGSAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMRSDDISGFHKILEGRMKESNRNSKVPQFVRRIEMVQRKSIMHYQQLDSQPFLKIVVALPTMVASCRGILDRGIQIDGLGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPAGKYKKTARNLSYCQLEYSELISHAPEGDYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGTDVMSFDTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERADALKIAEFPILGRIRSSRVRVKDTTFSSRQLGTRESKEVTIEGRVQFDLLQAIQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNADTRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLARGQSIKVLSQLLRKAKQKNLVIPNVKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCSLVTPEDVRKLNLPPESVNKTPSGETFVKSNLQKGILPEILDELLTARRRAKADLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTILNGYENNAEVIYGDTDSVMVQFGVSSVEDAMKLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDVPGAVQHVKSAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSNGDRTLCSHCKGREAELYCKTVAQVSDLETLFGKLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKVQLDRWSF 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0327 1084 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 71 1050 - -
Mibi13g0327 1084 CDD DNA_polB_delta_exo 287 516 - -
Mibi13g0327 1084 FunFam DNA polymerase 92 267 - -
Mibi13g0327 1084 ProSitePatterns DNA polymerase family B signature. 738 746 IPR017964 GO:0000166|GO:0003676
Mibi13g0327 1084 SUPERFAMILY Ribonuclease H-like 110 530 IPR012337 -
Mibi13g0327 1084 SUPERFAMILY DNA/RNA polymerases 549 959 IPR043502 -
Mibi13g0327 1084 Gene3D Palm domain of DNA polymerase 565 795 IPR023211 -
Mibi13g0327 1084 Gene3D DNA Polymerase, chain B, domain 1 91 267 - -
Mibi13g0327 1084 Pfam C4-type zinc-finger of DNA polymerase delta 994 1065 IPR025687 -
Mibi13g0327 1084 Gene3D - 812 967 IPR042087 -
Mibi13g0327 1084 CDD POLBc_delta 565 958 - -
Mibi13g0327 1084 SMART polmehr3 291 750 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi13g0327 1084 TIGRFAM pol2: DNA polymerase (pol2) 546 955 - -
Mibi13g0327 1084 MobiDBLite consensus disorder prediction 1 19 - -
Mibi13g0327 1084 FunFam DNA polymerase 639 691 - -
Mibi13g0327 1084 PRINTS DNA-directed DNA-polymerase family B signature 675 687 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi13g0327 1084 PRINTS DNA-directed DNA-polymerase family B signature 583 596 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi13g0327 1084 PRINTS DNA-directed DNA-polymerase family B signature 736 744 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi13g0327 1084 Pfam DNA polymerase family B 524 957 IPR006134 GO:0000166|GO:0003677
Mibi13g0327 1084 Gene3D - 292 510 IPR036397 GO:0003676
Mibi13g0327 1084 Gene3D Helix hairpin bin 639 691 - -
Mibi13g0327 1084 FunFam DNA polymerase 812 968 - -
Mibi13g0327 1084 Pfam DNA polymerase family B, exonuclease domain 121 460 IPR006133 -
Mibi13g0327 1084 MobiDBLite consensus disorder prediction 1 31 - -
Mibi13g0327 1084 FunFam DNA polymerase 331 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0327 Mibi-ChrMibi13 3251425 3264092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0327 14 1084 Core DNA Replication Machinery Family AT5G63960 82.374 0.0 1865