Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0290 ATGAGTGGAAGTGGTAGAAGGCGTTCCTCAAAGTGGGATTTAAGAGATGAACCTGAGTTTGTATCTGACAGCAAGCAATCGCGATCTGGATGGTCCTCGGCCAATGTTACTGGTGGCAATAGTTCAAAGTGGTCTTATTTGGAAGGGAGTGAGAAGCTAAAACCTAATATGCGATTATCATTCAAAGAAACTTTTTCTGGAGGCAGAGTTTCTACTAAGGATGATATTATGAATAAAGACTATAATAGAGATTTGGATACTGAAATGGCATGGGATGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGTAAGAGGCGCAGTCATTCCCCACAAAATGGTTTGGACAGGAGTAGAAGCCGGAGTCGGAGCCCTGCCCATGGTTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAGAATGAGAGCTGGAGGATTGCCCCAACCTTGTAGAGATTTCGCTGTTGGAAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTCCACCATGACAATCGTAATTATGAGGATGGCTGGGACACTAGAGACAGGAAAGATGGACCTCCCAGATATTCTGCTCCCTATGAAAGCAGGGACTATTCTGCTAGGAGTGGAAGATCAAATGAGACTTGTATCCATTTTGCACAAGGCAAATGTAGAATGGGAGCATCTTGCAAGTTTGTGCATCATAACAATTCTGATGACATGAGCAAAGGAAATGCAGATGATTCAACTAGAGAGAGGGAATTTGATCAAAAGCGCAGAGAAGGTTCTTTTGAGCGTGGTGGTGGGCATGAGCCAAACCGCTTTAGTGATACTCCCTGCAAGTTTTATGCAGCAGGTAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATAGGCTGGCATCTAGGAGCCCAAATAGAAGATTAAGAGATGACAGGTGGGGGAACAATCCAGGTGGAGATCAGGCATTGGATAGACCAAGAGCGAGTAACTCAGTTAGTCCTGGTAGAAGGCTAAGAGATGATGGATGGGGTCCAGAAGGCAACATGGTTGCCATGGATAAAATGTGGGATGGTCCAAAATTGAATGATGCTGTTGCTGTCTCAGATTCAGCAAAGCTGGGTGAAGATAAGAGTGGAAATATGGGTATACCAGAACCTGGATTCACTTCTTGGCCCAGGGCAGATGGATGGGGTGATAATTTAGATAACAACAAAGTCTATGCTGAGCCACCATTTGTAGGTGACAAGAAAAAAGCAGAGCAGTGGAAGACAGAAAATGCTGGTGCTCCCCAACCGATTGGGACTGACAAATGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGGGCATATTGACGACAAGAGTGGGCAGAATAAACATGGTTTGCCCCAGGGTGATGCATATTTAGCCACCTCCGAACATCACAGGTTACAAGTTGCTTCAGGACAAGGTTTCAATCAGAGCTCACAGAATGCAAATGCTTTGCATCCTTCTAGCAGTAATGTGGTAGGACATAGTCAAGGGGCAGTCCCTGTTGTTCCTCCACTTGGAGGGATTGCTGAAGTTATACAGAACCAAGCGTCTTCTGTAAAAAAATACGGTGTTGAACCAAAGATCATGGATGCAAGCTTACCACATGTTAGTACAATAAATACTCCAACTCAAAATATGGTGAGCAATGAACAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTTTGGTTCAGTTCCTGGGAACAGGTCAGCAACTTCCACAAATTTATGCTGCTCTAAATTCTCATGATGTGAAGGATACATCCTCCCTAGCCAAAATTGAAGTGTCCAGGGAGCCTGTTTCCAGTGCATGCATCAAGCCAGATCCTGTTATTGGATCCTGGAAGCAGTATGATCCAATGAGTGATAGTATGGAGCCAAAGAAGACTGATGCAGCTGGAATCGTGCCAGCCTTTTCTCCTAATAAAACAATTGCTGATAGTTCAGGGAGACAAAATCTTGGTGATTCTTGTGACAAGATTTCAGAAGAACAAATTGTCAAGAGTGAACATTTAATCCCATTGCAGTCAGGTCCAAATGTTGAAGCTAACAAGGGAAACAATGACGTGGCAGAGGATGAAAAAAAAGATTCTCAAGCAGATGATAAAAACACAAAAGATAATGGTCCTTCAGAAATTATGGACCAAAATGGGCCTGATGAGGCAAAGAAGACGAAAGATGTGAAGGGGATCCGTGCTTTTAAATTTGCGCTAGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGAAGGTCACATCAACAAAGATCATTATAAAACAATTGTGAAAAAAGTTGTTGATAAAGTAACTGGTACCATGCAGGCGGCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGGCAGCTTCTAAACCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2496 0.4315 MSGSGRRRSSKWDLRDEPEFVSDSKQSRSGWSSANVTGGNSSKWSYLEGSEKLKPNMRLSFKETFSGGRVSTKDDIMNKDYNRDLDTEMAWDADESYGMKMSPGLEEWKRKRRSHSPQNGLDRSRSRSRSPAHGFRWESGVNDRNRMRAGGLPQPCRDFAVGKCRRGSRCHFLHHDNRNYEDGWDTRDRKDGPPRYSAPYESRDYSARSGRSNETCIHFAQGKCRMGASCKFVHHNNSDDMSKGNADDSTREREFDQKRREGSFERGGGHEPNRFSDTPCKFYAAGNCRNGKYCRFSHDRLASRSPNRRLRDDRWGNNPGGDQALDRPRASNSVSPGRRLRDDGWGPEGNMVAMDKMWDGPKLNDAVAVSDSAKLGEDKSGNMGIPEPGFTSWPRADGWGDNLDNNKVYAEPPFVGDKKKAEQWKTENAGAPQPIGTDKWLVDAEMSPDWNYGSGSSGHIDDKSGQNKHGLPQGDAYLATSEHHRLQVASGQGFNQSSQNANALHPSSSNVVGHSQGAVPVVPPLGGIAEVIQNQASSVKKYGVEPKIMDASLPHVSTINTPTQNMVSNEQLAQLSSLSASLVQFLGTGQQLPQIYAALNSHDVKDTSSLAKIEVSREPVSSACIKPDPVIGSWKQYDPMSDSMEPKKTDAAGIVPAFSPNKTIADSSGRQNLGDSCDKISEEQIVKSEHLIPLQSGPNVEANKGNNDVAEDEKKDSQADDKNTKDNGPSEIMDQNGPDEAKKTKDVKGIRAFKFALVEFVKELLKPTWKEGHINKDHYKTIVKKVVDKVTGTMQAAHIPQTQEKIDHYLAASKPKLNKLVQAYVEKVQKA 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0290 831 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
Mibi13g0290 831 MobiDBLite consensus disorder prediction 305 353 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 491 515 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 181 207 - -
Mibi13g0290 831 Gene3D - 255 311 - -
Mibi13g0290 831 SUPERFAMILY CCCH zinc finger 277 299 IPR036855 GO:0046872
Mibi13g0290 831 Pfam CCCH-type zinc finger 279 299 IPR041367 -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 689 745 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 452 474 - -
Mibi13g0290 831 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
Mibi13g0290 831 Pfam RNA-binding, Nab2-type zinc finger 216 234 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 8 23 - -
Mibi13g0290 831 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 175 IPR000571 GO:0046872
Mibi13g0290 831 SMART c3hfinal6 211 236 IPR000571 GO:0046872
Mibi13g0290 831 SMART c3hfinal6 152 176 IPR000571 GO:0046872
Mibi13g0290 831 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Mibi13g0290 831 MobiDBLite consensus disorder prediction 181 197 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 106 132 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 106 150 - -
Mibi13g0290 831 ProSiteProfiles Zinc finger C3H1-type profile. 210 237 IPR000571 GO:0046872
Mibi13g0290 831 MobiDBLite consensus disorder prediction 706 728 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 236 272 - -
Mibi13g0290 831 Gene3D - 153 237 - -
Mibi13g0290 831 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 830 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 1 46 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 235 276 - -
Mibi13g0290 831 MobiDBLite consensus disorder prediction 24 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0290 Mibi-ChrMibi13 2912498 2916726 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi13g0290 zf-CCCH 5.3e-05 CL0537