Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0284 ATGCTTAACTCCGATGAAGCAGATATTGAAATATTCTTCGACTCATCAGATTTTCTGCCACCTCAAAACCCTGTTCCATACCAAGAGTTTGGGTATGAAGTTTGGGTGAATAAGCCTGAAAGTGTGAAGGAAAGAAGGCAACGTTTTTTCAAGGAAATGGGTTTTGCTGATACTGCTTCAAAAGTTTGCTCTGAAGAAATTAACGACTTGGAAATTGAAAGGACAATGGAGAGTGAAGGCGCAGAATCAAATGCCTTCAGTTCCTCTTCTGAAGCAAACGTCTTGTTTGATGAATGTAATGGAGGCGTGAACTTTGAAAGAAAGGCGTGTGAGTCATCATCATCTTCTTCTTCAGGTGAAGCTGAGACATCAGAAGAATGTCAATATGGTCCATTTGATGTGAGTAAAAAGAAAATGAAGGGATGGTGGAAGCTCTTTATGAAGAGCAGGAAAACAATTGGAGGGAAAGTGAGATCAAAATTGAATAGAGAGATGAGTAAAAGTCGCAGAATTAATGTAAAGCAGAACAAAAAGAGGTGGATGGAATTGAGTGCCTTGTATTTAGGGCAAGAGATTAGAGCTCATGAAGGCCTAATCTGGACTATGAAGTTTAGTCCTAATGGCCAATATCTAGCAAGTGGAGGTGAAGATGGGGTAGTACGTGTATGGCGTGTTATATCAATGGACACATCAAGCATTTCCTTCAATGCAGAAGAGACAAATTCTACTAGCAAAGTGAAGCAAGAAATCTCTTGTACTTGGAGGAAAAAGTCAAATATATCCTTCGTGGCTCTTCCAAACAAGGTTCTCCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATACCAGTGATGTCTTGGATTTGGCTTGGTCTGATTCAAATATTCTTTTGTCATCTTCAATGGACAAAACAGTTCGTTTGTGGCAAATTGGTTGTGATCAATGTATGGGCGTCTTCCATCACAATGATTATGTGACTTGCATCCAAGTAAACCCAGCTGATAATAACTACTTCATCAGTGGGTCTATAGATGGCAAAGTCCGAATATGGGGGTTACGTGAAGAGCGCGTTGTCGATTGGGCAGATGTACGAGATGTGATTACGGCTGTTAGTTACCAGCCAGATGGGAAGGGGTTTGTTGTTGGCTCCATCACAGGCGCTTGTCGTTTTTATATCGCTTCAGGCAAACATTTCCAACTTGAGGCAGAGATATGGGTTCATGGGAAAAAGAGATCAGCTGGCAACAAGATTACTGGCATTCAGTTTTCACAGAAAAATCACCAGAGGGTTATGATCACATCAGAAGATTCTAAAATTCGTGTGCTTAATGTCGATGGCTGTGAACTTGTGCAGAAATTTAAAGGTGTTACGAAATCAGGAAGCCAGAGGTGTGGCTCATTTACATCAACAGAAAATCATATCATTTCTGTTGGAGAGGACTCCCATGTGTACATTTGGAATTGCAATGACTTGGAAAATTCATCATCTAAACCCATAAAATCTGAGCGTTGCTGTGAGTACTTTTCCATTGAAGGTGTTACTGTGGCAATACCCTGGCTGGTAAATAGCACAGAACAAACAAGCTTATGTGGTAACTCAGAAATGCAACATCTTCAAGAGGCACGTCCTAGTGTTAGAGATTCAGAGCGTTTTTCTCTTGGTAATTGGTTCACCTTGGAAGGGGCGTGCCGGGGTTCGGTGACATGGCCGGAAGAGAAACTTCCAAGTTGGAATATACCATTTGCAGAAGATGAATATGATGCCATAGAGCTGTGCAATGAAAGAGGTGGATCAGAAACATGGGGACTATCCTTTGTGGTAGCTGGTTTGGATGGAACTATCAAGACATTCCATAACTTTGGATTGCCCGTTAGGATTTAG 1887 0.4128 MLNSDEADIEIFFDSSDFLPPQNPVPYQEFGYEVWVNKPESVKERRQRFFKEMGFADTASKVCSEEINDLEIERTMESEGAESNAFSSSSEANVLFDECNGGVNFERKACESSSSSSSGEAETSEECQYGPFDVSKKKMKGWWKLFMKSRKTIGGKVRSKLNREMSKSRRINVKQNKKRWMELSALYLGQEIRAHEGLIWTMKFSPNGQYLASGGEDGVVRVWRVISMDTSSISFNAEETNSTSKVKQEISCTWRKKSNISFVALPNKVLQIEESPLQEFFGHTSDVLDLAWSDSNILLSSSMDKTVRLWQIGCDQCMGVFHHNDYVTCIQVNPADNNYFISGSIDGKVRIWGLREERVVDWADVRDVITAVSYQPDGKGFVVGSITGACRFYIASGKHFQLEAEIWVHGKKRSAGNKITGIQFSQKNHQRVMITSEDSKIRVLNVDGCELVQKFKGVTKSGSQRCGSFTSTENHIISVGEDSHVYIWNCNDLENSSSKPIKSERCCEYFSIEGVTVAIPWLVNSTEQTSLCGNSEMQHLQEARPSVRDSERFSLGNWFTLEGACRGSVTWPEEKLPSWNIPFAEDEYDAIELCNERGGSETWGLSFVVAGLDGTIKTFHNFGLPVRI 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0284 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Mibi13g0284 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 362 IPR001680 GO:0005515
Mibi13g0284 628 CDD WD40 190 489 - -
Mibi13g0284 628 Pfam WD domain, G-beta repeat 275 310 IPR001680 GO:0005515
Mibi13g0284 628 Pfam WD domain, G-beta repeat 191 223 IPR001680 GO:0005515
Mibi13g0284 628 Pfam WD domain, G-beta repeat 316 352 IPR001680 GO:0005515
Mibi13g0284 628 SMART WD40_4 185 224 IPR001680 GO:0005515
Mibi13g0284 628 SMART WD40_4 314 353 IPR001680 GO:0005515
Mibi13g0284 628 SMART WD40_4 273 311 IPR001680 GO:0005515
Mibi13g0284 628 SMART WD40_4 448 489 IPR001680 GO:0005515
Mibi13g0284 628 SMART WD40_4 399 445 IPR001680 GO:0005515
Mibi13g0284 628 SMART WD40_4 355 394 IPR001680 GO:0005515
Mibi13g0284 628 Gene3D - 176 512 IPR015943 GO:0005515
Mibi13g0284 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 225 - -
Mibi13g0284 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 355 - -
Mibi13g0284 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 312 IPR001680 GO:0005515
Mibi13g0284 628 PANTHER WD REPEAT DOMAIN 44 136 625 IPR040324 -
Mibi13g0284 628 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Mibi13g0284 628 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Mibi13g0284 628 PRINTS G protein beta WD-40 repeat signature 298 312 IPR020472 -
Mibi13g0284 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 280 312 - -
Mibi13g0284 628 SUPERFAMILY WD40 repeat-like 187 494 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0284 Mibi-ChrMibi13 2842354 2844903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0284 277 387 U-box Gene Family AT2G33340 32.231 5.15e-06 47.4