Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0277 ATGTATGCTTCTTCTTCTTCCTCTACCTCTCTGCTTCTCCAGGATCTTCTCGGGGATTTCCACTCAAGAAGATTGCTCATTTTACACAACCCACTTAACTCACAAGCCAACCCTCCATCTTCCTTAAACAGCACCCATAATCCCACAGACAGTTACCTAGGAAATGGAAATTTTGATGCCAACGTTGTCATGGTGCTGTCTGTTTTGTTGTGTGCTCTTATTTGCTCTCTGGGCTTGAACTCCATCATAAGGTGTGCCTTAAGGTGTTCCAATCTTGTGGTCACAGTCGAGCCGGCCGCCGGAAACAACCCTCCGGCGAGATTAGCCAACACCGGAGTGAAGAAAAAAGCTCTTAAGACTTTCCCCACAGTAAATTACTCTGCTGAGCTGAAACTTCCAGGTTTGGACACAGAGTGTGTGATATGCTTATCAGACTTCAATAATGGCGAACGTGTCAGGATTTTGCCAAAATGTAACCATGGATTCCATGTGAAATGTATTGACAAGTGGTTGAGTTCACATTCGTCTTGTCCTAAGTGTAGGCAGTGCCTAATTCAAACTTGTCAGAAGATTGTTGGAACTAGCTCTTCCCTGCAGCCAGCTGAAACTATTATAAGGATTGCTCCTCTTGAACCAGAAGGTTTGGTCCGTAATTACAGGGAACAAAACTCTTAA 675 0.443 MYASSSSSTSLLLQDLLGDFHSRRLLILHNPLNSQANPPSSLNSTHNPTDSYLGNGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVTVEPAAGNNPPARLANTGVKKKALKTFPTVNYSAELKLPGLDTECVICLSDFNNGERVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLIQTCQKIVGTSSSLQPAETIIRIAPLEPEGLVRNYREQNS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0277 224 SUPERFAMILY RING/U-box 117 186 - -
Mibi13g0277 224 FunFam RING-H2 finger protein ATL73 102 186 - -
Mibi13g0277 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 186 IPR013083 -
Mibi13g0277 224 PANTHER RING-H2 FINGER PROTEIN ATL78 15 215 IPR044602 GO:0016567|GO:0016740
Mibi13g0277 224 CDD RING-H2_EL5_like 138 181 - -
Mibi13g0277 224 SMART ring_2 139 180 IPR001841 -
Mibi13g0277 224 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Mibi13g0277 224 Pfam Ring finger domain 138 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0277 Mibi-ChrMibi13 2767919 2768593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0277 32 185 C3H Transcription Factor Family AT3G10910 47.826 3.41e-42 139