LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi13g0273	ATGCTGGAAAACTCAACCTCATCGGAAAATACCCCAGCTCCGGTCAAGGACGGAGGAGCAAGTGGGCCCGACTCCGATGGCCTCCAAGATCAACTGCGAAATTCCTCCGGCCACCGATGGCCTCGAGAAGAGACATTGGCTTTGCTTCACATAAGGTCTGAGATGGACATTTCTTTTAGGGATATAAGCCCCAAAGGTCCTCTTTGGCAACAGGTTTCGAGGAGAATGGGCGAGCTAGGATACCATAGGAGTGCACAGAAATGTAAGGAGAAGTTTGAGAACATTTACAAGTACCATAGAAGGACAAAGGAAGGACGTTATGGTCGACCCAATCGCAAGAATTATCGTTTCTTTGAGCAACTGGAAGCTCTTGACACTTCAACAGAGAGGGAACATCACTCACCAGATACAACAACAGCCTCATTGGATGTTGTTCATCATGCCATGCCCTGCTCTGCTCGATTTCCTAGCGCAAATAATAATTCCAACACTACTTCTTCCAATGAAGGATCACCCAAAAAGAAGGGTAAGATGACCAAGTTTTTCCAGGGATTGATGGAGAAAGTGATAGAGAAGCAAGAGGCATTACAGAAGAATTTTATAGAGGTGTTAGAAAAATGTGAGCAAGATCGAATAGCAAGGGAGGAAGCGTGGAGGACTCAGGAATTAGCTAGGCTTAGTAGGGAGCGTGAACTTTTTGCTCAAGAAAGATCCGCTACTGCAGCCAAAGATGCTGCTTTGATTGCCTTTCTGAACAAGTTAACAAAACAATCATCATCAGCATGCCCCGTGCAGCTGCCGGAGAATATTCCGGTTGACCGGAACCTGACTCCCGTCGATATAGATAAGAACAAGGCAGAAAAGGTCAATGGAGTTTGTGCTGTTAGTGTTGCGGATAAGGAAGAATGTGGAAACAGTGTTGGGAATTTTATACAGATGAGTTCCTCCCGTTGGCCTAAAGAAGAAGTGGAAGCTTTGATTAGATTAAGGACAAATCTAGATGTGGATTATGAAGGAAATAATGGGACAAAGGGACCTTTGTGGGAGGAAATATCTTTGGCGATGAAGAAGATTGGGTATGATAGAAGTGCAAAGAGATGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATGAAGCAGAAAAACAAGAGGAAGCCAGAGGACTCAAAGACATGTCCATATTTTCACCAGCTAGATGAAATATACAGCAAGAAACCTAGGAAGGTTCAAGAATCAGGTGCTTCTTCTGGGAATGAGTTGAAGGCGGAGGAGCTATTGATGCATATTATGAACGGTCAAGATCAAGAGCGACAATCATCTGAAGATGCTGACAGAGAGAAGAGGAACCAGATTGAAGGAGATAAGGAAGATGTGGTGGATCAGATGGTAGACAATAGTGCTTCAACAGCAATCATGGGTTGA	1431	0.441	MLENSTSSENTPAPVKDGGASGPDSDGLQDQLRNSSGHRWPREETLALLHIRSEMDISFRDISPKGPLWQQVSRRMGELGYHRSAQKCKEKFENIYKYHRRTKEGRYGRPNRKNYRFFEQLEALDTSTEREHHSPDTTTASLDVVHHAMPCSARFPSANNNSNTTSSNEGSPKKKGKMTKFFQGLMEKVIEKQEALQKNFIEVLEKCEQDRIAREEAWRTQELARLSRERELFAQERSATAAKDAALIAFLNKLTKQSSSACPVQLPENIPVDRNLTPVDIDKNKAEKVNGVCAVSVADKEECGNSVGNFIQMSSSRWPKEEVEALIRLRTNLDVDYEGNNGTKGPLWEEISLAMKKIGYDRSAKRCKEKWENINKYFKRMKQKNKRKPEDSKTCPYFHQLDEIYSKKPRKVQESGASSGNELKAEELLMHIMNGQDQERQSSEDADREKRNQIEGDKEDVVDQMVDNSASTAIMG	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi13g0273	476	PANTHER	FI21293P1	17	451	-	-
	Mibi13g0273	476	MobiDBLite	consensus disorder prediction	438	464	-	-
	Mibi13g0273	476	ProSiteProfiles	Myb-like domain profile.	39	96	IPR001005	-
	Mibi13g0273	476	FunFam	Trihelix transcription factor GT-2	318	380	-	-
	Mibi13g0273	476	SUPERFAMILY	Homeodomain-like	315	391	IPR009057	-
	Mibi13g0273	476	SMART	sant	36	98	IPR001005	-
	Mibi13g0273	476	SMART	sant	314	377	IPR001005	-
	Mibi13g0273	476	MobiDBLite	consensus disorder prediction	152	176	-	-
	Mibi13g0273	476	CDD	GT1	39	103	-	-
	Mibi13g0273	476	ProSiteProfiles	Myb-like domain profile.	316	375	IPR001005	-
	Mibi13g0273	476	FunFam	Trihelix transcription factor GT-2	40	101	-	-
	Mibi13g0273	476	MobiDBLite	consensus disorder prediction	408	476	-	-
	Mibi13g0273	476	Gene3D	-	318	380	-	-
	Mibi13g0273	476	Gene3D	-	40	101	-	-
	Mibi13g0273	476	MobiDBLite	consensus disorder prediction	154	172	-	-
	Mibi13g0273	476	CDD	GT1	316	382	-	-
	Mibi13g0273	476	Pfam	Myb/SANT-like DNA-binding domain	316	404	IPR044822	-
	Mibi13g0273	476	Pfam	Myb/SANT-like DNA-binding domain	38	124	IPR044822	-
	Mibi13g0273	476	MobiDBLite	consensus disorder prediction	1	41	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi13g0273	Mibi-ChrMibi13	2738730	2740475	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi13g0273	35	408	Trihelix Transcription Factor Family	AT1G76890	42.105	3.09e-106	326

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Mibi13g0273		Myb_DNA-bind_4	1.5e-20	CL0123