Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0258 ATGGACTTTGACGAATACGATTACTTGGAGAAGGCAGTGGAGGAGCAGGAAGATCGAGATTCCAACAAGAAGAATAAGAAGAAGGAGAGCAGTGACAAGGCTGAAAGGAGTTACAGGAAGCGCGAGGTAGACGTCAATCTGGATGGTGAAGAAAACAAGAGCAGGAAGATCAGAGGCGGCGACGAGAATGGTTCCAAGAAGGACCGTGATGACCGCGATAGAGAACGGTCTAGCCGCGAAAAGGACCGCCATAGGAGCGTCAAGGAGAGGGACGGGGAGAGAGAGCGAGAGAGGAGTAATAGAGAGAAGGAGAGAGACAAAGAGAGGGAGAGGTCCTGGAGCAGCAGAAGTCGTTCTGATAGAGACAGAGAACGAGAACCGAAAACTAGAGATAGCCGGAGATTCAGAGACAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTATTTGCATATCAGATGCCCTTAAAGGCCACAGAGAGAGATGCTTATGAATTTTTCACAAAAGCTGGGAAGGTGAGGGATGTCCGTTTGATCATGGATAGGAATTCAAGACGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGTAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGTCAACTGCTTCTTGGACAGCCTGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTACCACTGGAGCTGCAGGTGTAACAGGACCATATGGAGCAGCAGACAAGAAACTTTATGTGGGAAATCTTCATTTCAACATGACGGAGAGTCAGCTGAGGGAAATTTTTGAGCCATTTGGTCCAGTGGAGCTCGTGCAACTGCCTACTGACCTAGAGACAGGACATTGCAAGGGGTTTGGCTTTATTCAATTTGCCCATCTTGAACATGCCAAAGCAGCTCAGAGTTTAAATGGAAAACTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTGGCAGATCACATTGGCAGTCAGGAAACAAATGCAAAATCTGCAGACTTGGATGATGATGAAGGTGGATTGGCCTTAAATGCTCAATCTAGAGCATTGCTTATGCAGAAGCTGGATCGATCTGGCATTGCCACGAGCATTACAGGGTCTGCTGGTGTGCCCATTTTGAATGGGTCTGTTCCTGCTCAACAGTCTGTTAGTTTGCCTAGTGCTCAAGGTTTAATTCCCACACCAGTTCCCCCAACACAAATCATGCCTACACCTGTAGTAGAAACTGTAGGAAGCCCTAGCGAGTGTCTACTATTGAAGAATATGTTTGATCCTACCACTGAGACAGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAGATATGGCCGGGTGAAGCATATTTATGTAGACAAAAGAAGTGCAGGATTTGTGTATTTGCGGTTTGAATCAGTGGAAGCAGCAAGAGCTGCTCAACAAGCTATGCACATGAGATGGTTTGCACGCAGAGCAATTTCAGCCATTTTTATGGAACCCCAGCTATATGAAGCCAGATTTAGAGTGGATGCTTGA 1569 0.4595 MDFDEYDYLEKAVEEQEDRDSNKKNKKKESSDKAERSYRKREVDVNLDGEENKSRKIRGGDENGSKKDRDDRDRERSSREKDRHRSVKERDGERERERSNREKERDKERERSWSSRSRSDRDREREPKTRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDAYEFFTKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATTGAAGVTGPYGAADKKLYVGNLHFNMTESQLREIFEPFGPVELVQLPTDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSCVADHIGSQETNAKSADLDDDEGGLALNAQSRALLMQKLDRSGIATSITGSAGVPILNGSVPAQQSVSLPSAQGLIPTPVPPTQIMPTPVVETVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSRYGRVKHIYVDKRSAGFVYLRFESVEAARAAQQAMHMRWFARRAISAIFMEPQLYEARFRVDA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0258 522 Gene3D - 424 521 IPR012677 -
Mibi13g0258 522 SUPERFAMILY RNA-binding domain, RBD 90 228 IPR035979 GO:0003676
Mibi13g0258 522 Gene3D - 146 239 IPR012677 -
Mibi13g0258 522 Gene3D - 249 347 IPR012677 -
Mibi13g0258 522 CDD RRM1_RBM39_like 154 226 - -
Mibi13g0258 522 SUPERFAMILY RNA-binding domain, RBD 255 509 IPR035979 GO:0003676
Mibi13g0258 522 MobiDBLite consensus disorder prediction 1 153 - -
Mibi13g0258 522 CDD RRM3_RBM39_like 427 509 - -
Mibi13g0258 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 230 IPR000504 GO:0003723
Mibi13g0258 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 222 IPR000504 GO:0003723
Mibi13g0258 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 327 IPR000504 GO:0003723
Mibi13g0258 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 451 504 IPR000504 GO:0003723
Mibi13g0258 522 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 518 - -
Mibi13g0258 522 TIGRFAM SF-CC1: splicing factor, CC1-like family 39 517 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mibi13g0258 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 333 IPR000504 GO:0003723
Mibi13g0258 522 MobiDBLite consensus disorder prediction 12 152 - -
Mibi13g0258 522 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 348 446 IPR029123 -
Mibi13g0258 522 SMART rrm1_1 154 226 IPR000504 GO:0003723
Mibi13g0258 522 SMART rrm1_1 429 507 IPR000504 GO:0003723
Mibi13g0258 522 SMART rrm1_1 256 329 IPR000504 GO:0003723
Mibi13g0258 522 CDD RRM2_RBM23_RBM39 257 329 - -
Mibi13g0258 522 FunFam Splicing factor CC1-like 83 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0258 Mibi-ChrMibi13 2606744 2614073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0258 227 328 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 3.34e-08 54.3