LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi13g0254	ATGTCTAAGGTGGCGAATCTGAGAGACAAGGCAAAGGAAGAAGAAGGTGAACAAAGAAGCAAGCCTGTGACGTCATCTATGCCGATGGTATTTCCAGATATAGATAGGGAGAGGGAGATGTCTGCCATGGTTTCAGCTTTGACCCAAGTTGTGTCGGGAGAAGTGCCATCAGATTATATGGCTTCTCATCAATATGAATATCCAACATACCTAAATACAGTCGAAGCTTCTGCCACACCATCTTCGTCTTCTTCATTTTATGTTGCTAGTTCTGCTGTAACAACAAGTATGGAAGGTGGCACATTCTCACAGAGAGCCTCATCCTCATCCCCTGTTTTCCCAACAAATAGAGAAGGGAGGAACGGAAGGAACGAAATGATGGAAATGGGAAATGCAGTGTATGAATACAAGGCAGAGAACAGGAGGGAGCAGGGGAGAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGGAAATGGGCTGCAGAAATAAGAGATCCATTTAAAGCAGCAAGGGTATGGTTAGGCACATTTGACACAGCAGAAGACGCAGCTAGAGCATACGACGAAGCTGCCTTGAGTTTTAGAGGCAGTAAGGCTAAGCTTAATTTCCCTGAAAATGTCACTCTTCGTTCTCCTCCCCAAAATCTTCAAAACTTGCAGAATGATCACATGGTTTCATCACATCTTCAACCATCCCCAATGGCATCCCTAATGCCACCTCCTGCATCTACACTTCCTATGCTTTATCCTACACAGGCTCAGATGAGTGATTCTGAGTATTTTGTACCTTCATCGTTTACATCTGCCGGTTACAACTTTTATTATCAATGA	834	0.4424	MSKVANLRDKAKEEEGEQRSKPVTSSMPMVFPDIDREREMSAMVSALTQVVSGEVPSDYMASHQYEYPTYLNTVEASATPSSSSSFYVASSAVTTSMEGGTFSQRASSSSPVFPTNREGRNGRNEMMEMGNAVYEYKAENRREQGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALSFRGSKAKLNFPENVTLRSPPQNLQNLQNDHMVSSHLQPSPMASLMPPPASTLPMLYPTQAQMSDSEYFVPSSFTSAGYNFYYQ	277

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi13g0254	277	MobiDBLite	consensus disorder prediction	1	30	-	-
	Mibi13g0254	277	SMART	rav1_2	148	211	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0254	277	PRINTS	Ethylene responsive element binding protein signature	171	187	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0254	277	PRINTS	Ethylene responsive element binding protein signature	149	160	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0254	277	Pfam	AP2 domain	148	197	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0254	277	MobiDBLite	consensus disorder prediction	101	123	-	-
	Mibi13g0254	277	MobiDBLite	consensus disorder prediction	1	20	-	-
	Mibi13g0254	277	PANTHER	DNA-BINDING DOMAIN	94	227	IPR044808	GO:0003700\|GO:0009873
	Mibi13g0254	277	FunFam	Ethylene-responsive transcription factor 2	147	206	-	-
	Mibi13g0254	277	SUPERFAMILY	DNA-binding domain	148	206	IPR016177	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi13g0254	Mibi-ChrMibi13	2584859	2585949	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi13g0254	138	212	AP2-EREBP Transcription Factor Family	AT5G61890	76.923	2.41e-34	123

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi13g0254		AP2	1.7e-15	CL0081

Showing 1 to 1 of 1 entries