LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi13g0201	ATGGCAACTATAGGTATGTATAATAATAATAATAATAATAATAACACGAGCCTAGCATCAGATTTCTTATATCCCTATAGTGAAGATCTGACGAAGGCACTTGAACCTTACATGAAAATGGATTCACCAACATCCTCTATCTCTTTTCCATCATCACCATCTTCCTCTTATAATTCACCCACTTCAATGTCTGGTTATTATCCCAATCTACCCCCACCACCATCGAGCTCCCACATATTTTCTCCGGGATTCTCGAGTACCATAGGCCTTAACCAACTCACACCATCCCAAATTCTTCAGATTCAGACTCAATTCCAGGTCCGACAACATCAATCCATTGACTTCCTGGGACCCAAACCTGTCCCCATGAAACAACATGTCCGTAATGCTCCGAAACCCATGAAACTATACAGAGGAGTGAGACAGAGACATTGGGGGAAATGGGTCGCTGAGATTAGACTCCCTAAGAATCGGACCCGTCTCTGGCTTGGAACTTTCGACACTGCCGAGGAAGCTGCTTTGGCTTATGACAACGCTGCTTATAAGCTTAGGGGTGATTTTGCTCGCCTGAATTTCCCTCATCTAAAACACCAAGGAGCTCATGTGTATGGTGAATTTGGGAATTATAAACCCCTTCATTCCTCTGTTGATGCTAAGCTTCAAGCTATTTGTGAAGGTTTGGCGAATTCCCAGAAACAAGGGAGTTCAGGGGAGACTTGTTCTGCTGGAGATTCAAAGCCTGAGGTGGTGTCTGATGAATCAGAATCGAAAAGTGACGTGGAGGATTGTAAGGTGGAGATCACATTCACAGCATCGTCTCCCTTGTCTGATGAATCATGGGCCGGATCGTCTTCACCTGAATCAGGCATCACTTTCTTGGATTTCTCAGATTCCAAGGATGAGGGTGAGACTATTGACTTTGGGTTGGAGAAGTTTCCATCTGTGGAGATTGATTGGTCTGCTATTTGA	969	0.4417	MATIGMYNNNNNNNNTSLASDFLYPYSEDLTKALEPYMKMDSPTSSISFPSSPSSSYNSPTSMSGYYPNLPPPPSSSHIFSPGFSSTIGLNQLTPSQILQIQTQFQVRQHQSIDFLGPKPVPMKQHVRNAPKPMKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGDFARLNFPHLKHQGAHVYGEFGNYKPLHSSVDAKLQAICEGLANSQKQGSSGETCSAGDSKPEVVSDESESKSDVEDCKVEITFTASSPLSDESWAGSSSPESGITFLDFSDSKDEGETIDFGLEKFPSVEIDWSAI	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi13g0201	322	CDD	AP2	135	195	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0201	322	MobiDBLite	consensus disorder prediction	42	62	-	-
	Mibi13g0201	322	Pfam	AP2 domain	137	185	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0201	322	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	1	322	-	-
	Mibi13g0201	322	PRINTS	Ethylene responsive element binding protein signature	137	148	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0201	322	PRINTS	Ethylene responsive element binding protein signature	159	175	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0201	322	Gene3D	AP2/ERF domain	136	194	IPR036955	GO:0003700\|GO:0006355
	Mibi13g0201	322	SMART	rav1_2	136	199	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0201	322	MobiDBLite	consensus disorder prediction	231	259	-	-
	Mibi13g0201	322	SUPERFAMILY	DNA-binding domain	136	194	IPR016177	GO:0003677
	Mibi13g0201	322	ProSiteProfiles	AP2/ERF domain profile.	136	193	IPR001471	GO:0003700\|GO:0006355
	Mibi13g0201	322	FunFam	Ethylene-responsive transcription factor 2	135	194	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi13g0201	Mibi-ChrMibi13	2177741	2178709	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi13g0201	1	322	AP2-EREBP Transcription Factor Family	AT4G39780	48.297	8.97e-84	252

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi13g0201		AP2	7.9e-15	CL0081