LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi13g0177	ATGGAACGGTATGATATAATCAAAGATATTGGGTCTGGCAATTTTGGGGTGGCAAAGCTAGTGAAGGATAAACGGAGTGGTGACTTATATGCCATCAAGTTTATTGAGCGAGGCTTCAAGATTGATGAGCATGTTCAAAGGGAGATAATAAATCATAGATCCTTGAAGCATCCTAATATCATTCGATTCAAAGAGGTGTTGCTCACTCCAACACATCTTGCCATAGTGATGGAATATGCTTCTGGAGGAGAACTGTTTGAAAGAATATGCAATGCGGGTAGATTTAGTGAAGACGAGGCAAGGTATTTCTTTCAGCAGTTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCACAGAGATCTCAAGCTAGAAAACACACTCTTAGATGGAAGCACAGCACCACGACTCAAAGTTTGCGACTTTGGCTATTCAAAGTCATCTGTTCTGCACTCTCAGCCCAAATCTACTGTAGGAACCCCTGCTTATATTGCACCAGAGGTTTTGTCGCGTAGAGAATATGATGGAAAGGTTGCAGATGTTTGGTCTTGTGGTGTAACCTTATATGTCATGCTGGTTGGTGCTTATCCTTTTGAAGATCATGATGATCCTAAAAACTTTAGAAAAACACTTCAGCGAATTCTCAGCGTCCACTATTCTGTACCAGACTATGTTCGTATCTCAAAAGAATGTAAACACCTTCTATCCAGAATATTTGTGGCCGACCCAGAGAAGAGAATTACGATCCCAGAAATCAAAATGCACACGTGGTTCCTGAAGAACTTGCCAGTAGAATTTATGGACAAAGGGAAACAAAGTGGGATGCTAGAAGACTTAGTGAACGATTCATGCGGGAGGCAGAGCATAGAAGAAATATCGAGTATAATTCAAGAAGCTGGGAAAGCAGGGGATCAAGGCCGAAGAGTTGGAGGGCAATTCGTTGGGATTGGAAGCATGGATCTTGATGAGATGGATACTGATGCTGACATTGATGATTTTGAGACAAGTGGTGATTTTGTCTGTGCTTTGTGA	1038	0.4162	MERYDIIKDIGSGNFGVAKLVKDKRSGDLYAIKFIERGFKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYASGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSTAPRLKVCDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDHDDPKNFRKTLQRILSVHYSVPDYVRISKECKHLLSRIFVADPEKRITIPEIKMHTWFLKNLPVEFMDKGKQSGMLEDLVNDSCGRQSIEEISSIIQEAGKAGDQGRRVGGQFVGIGSMDLDEMDTDADIDDFETSGDFVCAL	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi13g0177	345	SMART	serkin_6	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi13g0177	345	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Mibi13g0177	345	FunFam	Serine/threonine-protein kinase SRK2E	1	79	-	-
	Mibi13g0177	345	Gene3D	Phosphorylase Kinase; domain 1	1	79	-	-
	Mibi13g0177	345	SUPERFAMILY	Protein kinase-like (PK-like)	2	266	IPR011009	-
	Mibi13g0177	345	PANTHER	SERINE/THREONINE KINASE	2	288	-	-
	Mibi13g0177	345	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	119	131	IPR008271	GO:0004672\|GO:0006468
	Mibi13g0177	345	FunFam	Serine/threonine-protein kinase SRK2E	80	268	-	-
	Mibi13g0177	345	Pfam	Protein kinase domain	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi13g0177	345	CDD	STKc_SnRK2	3	259	-	-
	Mibi13g0177	345	Gene3D	Transferase(Phosphotransferase) domain 1	80	267	-	-
	Mibi13g0177	345	ProSiteProfiles	Protein kinase domain profile.	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi13g0177	Mibi-ChrMibi13	1931975	1934903	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi13g0177	3	270	CBL-interacting serine-threonine protein kinases	AT4G24400	42.960	3.99e-69	220

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Mibi13g0177		Pkinase	2.8e-71	CL0016