Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0086 ATGTCAGGCCTTTATCCCTCCAAGAAAGTGGCCGATAGGTATCTTAAGCGTGGAGTCCTCGGTGAAGGTACCTATGGAGTAGTATACAAAGCTATTGATACCCAGACAGGACAAACAGTTGCGATTAAGAAAATCCGGTTTGGCAGGCAGAAGGAAGGGAAAAATTTTACGGCCATAAGGGAGATCAAAATACTGAAAGAGCTTAAAGATCCAACTATTATTGAGTTGATTGATACTTTCCCGCATAAAGGGAATTTGCATCTTGTCTTTGAATTCATGGAGACGGATCTTGAAGCTGTTATTAGAGACCATGATATTTTTCTTTCACCAGCTGATGTAAAATCTTACCTTCAAATGACTCTGCAAGGTCTTGCTTATTGCCACAAGAAATGTGTTTTGCATAGGGATATGAAACCAAACAACTTGCTGATAGGGTCTAATGGACAGCTAAAACTTGCAGATTTTGGTTTAGCTCGAATCTTTGGGAGCCCAGACCGAAGATTTACTAATCAGGTGTTTACTCGGTGGTATAGAGCGCCAGAGCTTTTATTTGGTACGGAGCAATATGGTTCAGGGGTAGATGTTTGGGCAGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGGCCCTTTTTTCCGGGTTCAAGTGACATTGATCAAATAGCTAAGATATTTGCAGCATTTGGGACTCCAACTCGTTCTCAGTGGCCGGATTTGCAATACCTTCCTGACTATGTTGAATACCAACATGTTCCTGCCCTTCCCTTTCGTTCTTTATTTCCATTGGCAAGTGATGATGCTTTAGATCTATTGTCAAAGATGTTTACCTATGATCCAAAAGCTAGAATTTCAGCTGCGCAAGCATTAGAGCACAGGTACTTTCACTCAGCACCTCTGCCCACAGAACCATGCAAACTACCTAGACCTGCCCCTAAAAAGGAATCCATGGCTTCTGATTTAAATCCACATGAGTGTCCAACTATACGATCACCCCCAAAAAAGTCCCGGAGAGTGAGGCCAGGACGTGATGCTGGTAACTTCAGGCAGACTGCTGGTGATAGTACAGGAAATAATGAACCAGCACCAATGTCATTAGATTTTTCAATCTATATATTAAAATCTCCATATAGACCTACAATTAACAGTGCTGACAGATCAAATTTGAAGAGAAAGTTAGATCTAGAATTCCAGCAGCCAGAATGA 1203 0.4165 MSGLYPSKKVADRYLKRGVLGEGTYGVVYKAIDTQTGQTVAIKKIRFGRQKEGKNFTAIREIKILKELKDPTIIELIDTFPHKGNLHLVFEFMETDLEAVIRDHDIFLSPADVKSYLQMTLQGLAYCHKKCVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTNQVFTRWYRAPELLFGTEQYGSGVDVWAAACIFAELLLRRPFFPGSSDIDQIAKIFAAFGTPTRSQWPDLQYLPDYVEYQHVPALPFRSLFPLASDDALDLLSKMFTYDPKARISAAQALEHRYFHSAPLPTEPCKLPRPAPKKESMASDLNPHECPTIRSPPKKSRRVRPGRDAGNFRQTAGDSTGNNEPAPMSLDFSIYILKSPYRPTINSADRSNLKRKLDLEFQQPE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0086 400 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Mibi13g0086 400 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Mibi13g0086 400 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Mibi13g0086 400 MobiDBLite consensus disorder prediction 300 363 - -
Mibi13g0086 400 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Mibi13g0086 400 SUPERFAMILY Protein kinase-like (PK-like) 9 300 IPR011009 -
Mibi13g0086 400 FunFam Cyclin-dependent kinase D-1 5 94 - -
Mibi13g0086 400 Pfam Protein kinase domain 17 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g0086 400 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g0086 400 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g0086 400 MobiDBLite consensus disorder prediction 348 362 - -
Mibi13g0086 400 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Mibi13g0086 400 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Mibi13g0086 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0086 Mibi-ChrMibi13 1150441 1153363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0086 8 397 Core Cell Cycle Gene Families AT1G18040 73.077 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Mibi13g0086 Pkinase 1.3e-74 CL0016