LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi13g0051	ATGGATGTGAAAGGAAGAAGAAGCAGCTCCCCAACCCTCCATGCCGACGAGGACGAGCTCGACCTCCGACGAGGGCCATGGACGGTGGACGAGGACCTCACCCTCATCAACTACATAACCACTCACGGCGAAGGTCGCTGGAATTCCCTTGCCCGCTCCGCTGGCCTCAAACGTACCGGCAAGAGCTGCAGATTGAGGTGGCTCAACTATCTCCGTCCCGATGTCCGACGAGGCAATATCACTCTCGAAGAGCAGCTCATGATCCTCGAACTCCATTCTCGTTGGGGAAACAGGTGGTCCAAGATAGCCCAGTATCTGCCGGGAAGAACAGACAATGAGATAAAGAATTACTGGAGAACGCGCGTGCAAAAGCATGCGAAACAACTAAAATGTGACGTGAACAGCAAGCAATTCAAGGATACCATGCGCTACCTTTGGATGCCACGCCTGGTTGAGCGCATTCAGGCCGCTTCCGCCACCACAACTTCTCAGGCCGCCACCACAAATTCCACACACAATAATCATTACAACAACATGCAAGCACTTGATAATGGGAACATGATGATGAACACGGCTACTGCGCCGGCCATCATCAACAACAACAATGACTTTGGAGGCTCCCACCTCACACAAAGCTACACGCCGGAAAACAGCAGCACCGGAGCTTCCTCTGACTCATTCGGAACACAGGTTTCGCCGGTGTCGGAGCTGGAGCTGACTGATTATTACAATACTACTGTCGTCCCTAGTCATCATCAGGATTATTACCATCCCTCTCACATAAGCTACTCTGATTGCATCACCAGCCCATCTGGGTTATACCCTCAAGGATTGGATTATTCGCAGGTGATGGAGCCAGGCAACCCCTGGATTCAGGCAGGGGACACTTTGGACAATTTGTGGAATGTTGAGAATATGATGTTTTTACAGCAACAGCTCAATATTGACTCCATGTAA	957	0.5099	MDVKGRRSSSPTLHADEDELDLRRGPWTVDEDLTLINYITTHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAASATTTSQAATTNSTHNNHYNNMQALDNGNMMMNTATAPAIINNNNDFGGSHLTQSYTPENSSTGASSDSFGTQVSPVSELELTDYYNTTVVPSHHQDYYHPSHISYSDCITSPSGLYPQGLDYSQVMEPGNPWIQAGDTLDNLWNVENMMFLQQQLNIDSM	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi13g0051	318	FunFam	Myb transcription factor	24	76	-	-
	Mibi13g0051	318	Pfam	Myb-like DNA-binding domain	24	71	IPR001005	-
	Mibi13g0051	318	Pfam	Myb-like DNA-binding domain	77	120	IPR001005	-
	Mibi13g0051	318	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	21	71	IPR017930	-
	Mibi13g0051	318	ProSiteProfiles	Myb-like domain profile.	72	122	IPR001005	-
	Mibi13g0051	318	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	72	126	IPR017930	-
	Mibi13g0051	318	SMART	sant	23	73	IPR001005	-
	Mibi13g0051	318	SMART	sant	76	124	IPR001005	-
	Mibi13g0051	318	CDD	SANT	26	71	IPR001005	-
	Mibi13g0051	318	CDD	SANT	81	120	IPR001005	-
	Mibi13g0051	318	FunFam	MYB transcription factor	81	144	-	-
	Mibi13g0051	318	Gene3D	-	81	146	-	-
	Mibi13g0051	318	ProSiteProfiles	Myb-like domain profile.	19	71	IPR001005	-
	Mibi13g0051	318	Gene3D	-	24	76	-	-
	Mibi13g0051	318	SUPERFAMILY	Homeodomain-like	21	118	IPR009057	-
	Mibi13g0051	318	MobiDBLite	consensus disorder prediction	207	229	-	-
	Mibi13g0051	318	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	19	196	IPR044676	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi13g0051	Mibi-ChrMibi13	836989	838641	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi13g0051	1	309	MYB Transcription Factor Family	AT3G06490	53.495	3.62e-88	265

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi13g0051		Myb_DNA-binding	1.8e-14	CL0123