Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0021 ATGGACGGACGAGGGTAAGGTCCGGACTTCAGAGCGCCAACGACTGCGAAACTGATAAGATCGATGAGTTTTGAAGGAAAGAAGCCAAAATTGATGGAGGAAATGGCAATCCCTCCGACTGAGGCAGTGGACGTTGAAGCCTTCATTTGCACGCCCATCTGGAATAAGGGCACAACCAAATCCAATGCCATCTCTGTGGAGCAGTACGCCAACGATCGAGACCTCCACCTCGCGATCATGGCTTCTCTGGGTAAAGCAACGCCCGCCGCGAAAATCTTCATCGACCTTTCCGATGGCGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGAGGATTCTTAGGTTTCAGCCTAAAAGCAGCTCTTTCGGGAAACGAAGAAGGGATCACACTTTCGAAACAGGGGAATCCTCCAATTCTGTACCATTTGTTTGCGGAATATGTGCCGATACAAAGAGTGCAAGCGAGTCTTTTAACATCAGTGGTTGCTCACACGCTTATTGCACAGAGTGTGTGATTAAGTATTTGGAAACAAAGCTGCAAGAAAACATTGTGAACATTAGATGTCCAGTGCCAGAGTGTGGTGGGTTGCTGGAGCCGGAGGATTGCAGGGGGATTCTTCCCCGGGAAGTGTATGACAGGTGGGGGTATGCCATGTGTGAGGCTGTGATTCTGGCAGAAGAGAAGTTCTACTGCCCGTACAAGGACTGTTCTGCGCTGCTCATTGATGATGGGGGAGGGGAAAGGGGCATCACGGAGTCGGAGTGTCCCAACTGTAGGAGACTCTTCTGTGCGCAGTGTAAGGTGCCGTGGCATTCTGGAATTGAGTGCTCTGAGTTTCAGAAATTAGGTAATGACGAGAGGGAGAAGGAAGATATCATGCTCATGCAGCTTGCTCGCAACCATAAGTGGAGGAGGTGTCCCCGCTGTAGGTTCTACGTCGAGAAGTCTTCTGGCTGTCTCTATATGAAATGCAGGTGTGGAGTTGCCTTCTGCTATAACTGTGGAACTGTCTCAACAAATAATTCCCATTTTTGCCATATCTGCAAACGCTAA 1053 0.4995 MDGRGXGPDFRAPTTAKLIRSMSFEGKKPKLMEEMAIPPTEAVDVEAFICTPIWNKGTTKSNAISVEQYANDRDLHLAIMASLGKATPAAKIFIDLSDGDEEEEEEEEEVRILRFQPKSSSFGKRRRDHTFETGESSNSVPFVCGICADTKSASESFNISGCSHAYCTECVIKYLETKLQENIVNIRCPVPECGGLLEPEDCRGILPREVYDRWGYAMCEAVILAEEKFYCPYKDCSALLIDDGGGERGITESECPNCRRLFCAQCKVPWHSGIECSEFQKLGNDEREKEDIMLMQLARNHKWRRCPRCRFYVEKSSGCLYMKCRCGVAFCYNCGTVSTNNSHFCHICKR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0021 350 ProSiteProfiles Zinc finger RING-type profile. 144 192 IPR001841 -
Mibi13g0021 350 FunFam RBR-type E3 ubiquitin transferase 278 350 - -
Mibi13g0021 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 223 IPR013083 -
Mibi13g0021 350 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Mibi13g0021 350 ProSiteProfiles TRIAD supradomain profile. 140 350 IPR044066 -
Mibi13g0021 350 SUPERFAMILY RING/U-box 142 221 - -
Mibi13g0021 350 SUPERFAMILY RING/U-box 217 281 - -
Mibi13g0021 350 SUPERFAMILY RING/U-box 287 346 - -
Mibi13g0021 350 FunFam RBR-type E3 ubiquitin transferase 139 225 - -
Mibi13g0021 350 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 106 343 IPR031127 GO:0004842|GO:0016567
Mibi13g0021 350 SMART ibrneu5 286 348 IPR002867 -
Mibi13g0021 350 SMART ibrneu5 212 276 IPR002867 -
Mibi13g0021 350 Gene3D - 274 350 - -
Mibi13g0021 350 Pfam IBR domain, a half RING-finger domain 222 276 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0021 Mibi-ChrMibi13 446454 448002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0021 144 335 C3H Transcription Factor Family AT2G19610 30.198 1.67e-23 99.0