Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2169 ATGTACCTCGTCTCTCGTCAGTTGTCACTTGGGTTTGTGTTTTCTCATGCGCGCTTGAAATTGGAGATGAGTAATACCAACGAAAACGAGGAATCTGGCCAGAATGTGCCCGAGAGTGGGAGCCAAAGCAAGCAATTAGTTGATGCACAGGTTCAACTCGAGGCTTCATCTAATCCTATTCCTGAAGAGGTAGCTACGAATCGTGTTGAAAATCTGACGGTAGACGCACCTGCTGGTGATGAAAATCTGGAACCAGATGCTATGTCGGATGGTACTCAACAACAAGAAGATCAAAATAATAAAATTTTCCACTCCGTCCCAGTAGAATCCAGTGCTCAACTTTTGGTTAAAATTGAGTCAGAACAACACGCAGCAGATATGAAGACTGAGGTCAAAGATTTCTCACAGACAGATACTGGCATCGAGAGTGTTTCTTTTGTTGGTGAGGAAAATGCTGATACAATTGAAACGGTTAAGAATGTCAAGCCTGAAGCTTGTGAAGTCACTGCCAGTAAAACTTGCAACAGTGGTGATTCCACACCCATGGGCCATAATGAACCTGCAACACCGCATCCTGTTCCTGTTGATATAAAAGCTGGGATTGAGAATGGCATAAAAGTTGGGACTAAGGTCCATGAAGATCATGCTGCAGCACCTGTAGATAAAGGGAATTCAAACACAAAGCACTCTTTTTTAGATGTCGACTATGATGGAAATGAGTCAGGAACCGAAGCAGAGCAGTCTGCTTTTATGAAGGAGCTTGAAAATTTTTTTAGGGAGAGAAGCATGGAATTTAAACCCCCAAAGTTCTATGGAGAGGGGCTTAATTGTCTGAAGTTGTGGAGAGCAGTGACCAGATTGGGTGGCTATGACAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTTGGAGAGTCTTTCAAGCCTCCAAAGACATGTACAACTGTATCATGGACGTTTCGAGGATTCTATGAGAAGGCTCTTCTTGATTATGAAAGGCATAAAACAAAAGGTGGTGAGCTTACTGTTCCTATTGCTTCTCATTCAGAGCCTATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCACGGAGAGATGCTGCAGCACGGGCTATGCAAGGTTGGCACTCACAACGTCTTCTTGGTAACGGCGAAGTTAGTGACCCGATTATTAAGGATAGGACGTCCATGCCCATGCAGAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTAAAACGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCCGCACGCAGTAAACCATCAAAGCCACAATTGGACACAGCAGTTGTTGATATCGGACCTCCGGCTGATTGGGTAAAGATAAATGTCCAAAAAACAAAAGATTGTTTTGAGGTCTATGCATTAGTTCCTGGCCTTCTGCGAGAAGAGGTCCGTGTTCAATCAGACCCAGCAGGACGGTTGGTCATTAGTGGTGAACCTGAGCATCCTGATAATCCATGGGGGGTTACACCTTTCAAAAAGGTTGTAAGCTTGCCTTCAAGGATTGATCCTCATCAGACATCAGCTGTGGTTACATTGCACGGACAGCTGTTTGTTCGTGTCCCATTTGAACAATCAGAGTAG 1617 0.4391 MYLVSRQLSLGFVFSHARLKLEMSNTNENEESGQNVPESGSQSKQLVDAQVQLEASSNPIPEEVATNRVENLTVDAPAGDENLEPDAMSDGTQQQEDQNNKIFHSVPVESSAQLLVKIESEQHAADMKTEVKDFSQTDTGIESVSFVGEENADTIETVKNVKPEACEVTASKTCNSGDSTPMGHNEPATPHPVPVDIKAGIENGIKVGTKVHEDHAAAPVDKGNSNTKHSFLDVDYDGNESGTEAEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTKGGELTVPIASHSEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRTSMPMQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2169 538 Gene3D - 244 341 IPR036431 GO:0003677
Mibi12g2169 538 Gene3D - 435 538 IPR008978 -
Mibi12g2169 538 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 438 538 IPR002068 -
Mibi12g2169 538 CDD ACD_sHsps_p23-like 457 533 - -
Mibi12g2169 538 SUPERFAMILY ARID-like 238 348 IPR036431 GO:0003677
Mibi12g2169 538 MobiDBLite consensus disorder prediction 77 96 - -
Mibi12g2169 538 FunFam AT-rich interactive domain-containing protein 3 244 343 - -
Mibi12g2169 538 SMART bright_3 245 336 IPR001606 GO:0003677
Mibi12g2169 538 MobiDBLite consensus disorder prediction 26 47 - -
Mibi12g2169 538 FunFam AT-rich interactive domain-containing protein 3 430 538 - -
Mibi12g2169 538 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 59 537 IPR045147 GO:0006357
Mibi12g2169 538 ProSiteProfiles ARID domain profile. 244 335 IPR001606 GO:0003677
Mibi12g2169 538 Pfam ARID/BRIGHT DNA binding domain 247 331 IPR001606 GO:0003677
Mibi12g2169 538 SMART ARID_2 241 331 - -
Mibi12g2169 538 SUPERFAMILY HSP20-like chaperones 447 534 IPR008978 -
Mibi12g2169 538 CDD ARID 246 331 - -
Mibi12g2169 538 Pfam Hsp20/alpha crystallin family 455 537 IPR002068 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2169 239 536 ARID Transcription Factor Family AT1G76510 64.356 1.60e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mibi12g2169 HSP20 7.9e-06 CL0190