Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mibi12g2124 | ATGGCGGATTCTCCTCTCAGAAGGACTTCAAGGTCCCCTTCCCCATGGAGAGCCCAGTCAAGATCGAGATCAAGGTCAAAGACTCCGCCCAGGGCTAGGTCAAGGTCTCGTTCTAGGTCAAGATCCTGGTCAAGACACAGGCCGAAGTCCCGTTCAAGAAGCCGTGGCAGATCAAGGTCAAGAAGTCATGGAAGGGCTGAAGTTGTAAATCCTGGGAATACTCTCTATGTTACTGGTCTGTCTTCAAGGGTTACTGAGAGGGACCTAGAAGAGCACTTTTCTAAGGAAGGAAAGGTTGCATCATGTTTCCTGGTGGTGGAGCCTCGTACCCGCATTTCCCGTGGTTTTGCTTTTGTTACGATGGATAATGTTGAGGATGCGAACCGCTGTATCAAGTATCTTAATCAATCTGTACTTGAAGGTCGCTATATTACAGTTGAGCAGTCACGGAGGAAAAGGGCTAGAACTCCTACGCCAGGGCACTATCTTGGTCTCAAAAGCACTAGAGACTATGGTTATCGTGGTGATCGTGGAAGGTACCGTGGTGGGTCAGGTCGTGATGACTATACTTATCGTAGGTCTCCAAGGCGCTCACCATACCGAGGTGGTCGGGATTCATCACAGCGGCACTCACCCTATGGTGGAAGATCTCGGAGGGACAGATCAAGGTCCCTCCCTTATTCTCCTTATGGCAGTCCTGACAGGAAGTATTCTCGGGGGAGGTGA | 726 | 0.5041 | MADSPLRRTSRSPSPWRAQSRSRSRSKTPPRARSRSRSRSRSWSRHRPKSRSRSRGRSRSRSHGRAEVVNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEDANRCIKYLNQSVLEGRYITVEQSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGSGRDDYTYRRSPRRSPYRGGRDSSQRHSPYGGRSRRDRSRSLPYSPYGSPDRKYSRGR | 241 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mibi12g2124 | 241 | MobiDBLite | consensus disorder prediction | 24 | 60 | - | - | |
Mibi12g2124 | 241 | SUPERFAMILY | RNA-binding domain, RBD | 68 | 183 | IPR035979 | GO:0003676 | |
Mibi12g2124 | 241 | SMART | rrm1_1 | 74 | 147 | IPR000504 | GO:0003723 | |
Mibi12g2124 | 241 | MobiDBLite | consensus disorder prediction | 170 | 204 | - | - | |
Mibi12g2124 | 241 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Mibi12g2124 | 241 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 75 | 144 | IPR000504 | GO:0003723 | |
Mibi12g2124 | 241 | CDD | RRM_RBMX_like | 72 | 151 | - | - | |
Mibi12g2124 | 241 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 73 | 151 | IPR000504 | GO:0003723 | |
Mibi12g2124 | 241 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 59 | 236 | - | - | |
Mibi12g2124 | 241 | MobiDBLite | consensus disorder prediction | 148 | 241 | - | - | |
Mibi12g2124 | 241 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 3 | 157 | - | - | |
Mibi12g2124 | 241 | Gene3D | - | 12 | 157 | IPR012677 | - | |
Mibi12g2124 | 241 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mibi12g2124 | Mibi-ChrMibi12 | 37641370 | 37644165 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mibi12g2124 | 72 | 155 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 34.524 | 4.09e-08 | 51.6 |