Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2124 ATGGCGGATTCTCCTCTCAGAAGGACTTCAAGGTCCCCTTCCCCATGGAGAGCCCAGTCAAGATCGAGATCAAGGTCAAAGACTCCGCCCAGGGCTAGGTCAAGGTCTCGTTCTAGGTCAAGATCCTGGTCAAGACACAGGCCGAAGTCCCGTTCAAGAAGCCGTGGCAGATCAAGGTCAAGAAGTCATGGAAGGGCTGAAGTTGTAAATCCTGGGAATACTCTCTATGTTACTGGTCTGTCTTCAAGGGTTACTGAGAGGGACCTAGAAGAGCACTTTTCTAAGGAAGGAAAGGTTGCATCATGTTTCCTGGTGGTGGAGCCTCGTACCCGCATTTCCCGTGGTTTTGCTTTTGTTACGATGGATAATGTTGAGGATGCGAACCGCTGTATCAAGTATCTTAATCAATCTGTACTTGAAGGTCGCTATATTACAGTTGAGCAGTCACGGAGGAAAAGGGCTAGAACTCCTACGCCAGGGCACTATCTTGGTCTCAAAAGCACTAGAGACTATGGTTATCGTGGTGATCGTGGAAGGTACCGTGGTGGGTCAGGTCGTGATGACTATACTTATCGTAGGTCTCCAAGGCGCTCACCATACCGAGGTGGTCGGGATTCATCACAGCGGCACTCACCCTATGGTGGAAGATCTCGGAGGGACAGATCAAGGTCCCTCCCTTATTCTCCTTATGGCAGTCCTGACAGGAAGTATTCTCGGGGGAGGTGA 726 0.5041 MADSPLRRTSRSPSPWRAQSRSRSRSKTPPRARSRSRSRSRSWSRHRPKSRSRSRGRSRSRSHGRAEVVNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEDANRCIKYLNQSVLEGRYITVEQSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGSGRDDYTYRRSPRRSPYRGGRDSSQRHSPYGGRSRRDRSRSLPYSPYGSPDRKYSRGR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2124 241 MobiDBLite consensus disorder prediction 24 60 - -
Mibi12g2124 241 SUPERFAMILY RNA-binding domain, RBD 68 183 IPR035979 GO:0003676
Mibi12g2124 241 SMART rrm1_1 74 147 IPR000504 GO:0003723
Mibi12g2124 241 MobiDBLite consensus disorder prediction 170 204 - -
Mibi12g2124 241 MobiDBLite consensus disorder prediction 1 23 - -
Mibi12g2124 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Mibi12g2124 241 CDD RRM_RBMX_like 72 151 - -
Mibi12g2124 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Mibi12g2124 241 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 59 236 - -
Mibi12g2124 241 MobiDBLite consensus disorder prediction 148 241 - -
Mibi12g2124 241 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 157 - -
Mibi12g2124 241 Gene3D - 12 157 IPR012677 -
Mibi12g2124 241 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2124 Mibi-ChrMibi12 37641370 37644165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2124 72 155 Eukaryotic Initiation Factors Gene Family AT1G49760 34.524 4.09e-08 51.6