LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi12g2116	ATGGATAATCAGCACCGCCATTTATTGGCTGCTCCACCGCCGGAAACGGCAAAGCCACCCAATTCCAAAAGCAGCTACCACCTCACTCTGTTGGTAGTGTTTGTTTCAGGCATTTTATTTTTTACAGTAATGGTAGTTTCATTGTTGTACTGCCTCATCAAGAGAAAGAGTATTCCACTTAAATGCATGAGGAGTTCGAAAGGAGGAAAAGATGAAAAGAGTTTGAAATATGATAACATATCATTGAGACGTTTTGATTTGGAGGAACTAAAGAAGGCCACAAATAATTTTAGCCCAGATTGCTTTCTGGGTTCTGGTGCATTTGGAACGGTGTATAAAGGAACCTTTGAATTAGAAGGAACATTAGCCATTAAAAGAGCTCATGGTGAATCATTCTTAAGCAAGGCAGAGTTCATAAATGAAGTGAGGCTCATTTCTAAAGTAAAGCACAGAAATCTTGTTAGTTTGGTGGGATATTGTGAAGAACCTGGAGATGGGGTCCAATTGCTGATTTATGAGTACGTGCCTAATGGCTCTCTGCTCGAGTACATGATGGGAAAAAGAGGGAAGAGCTTGACTTGGAGGCAAAGAGTGAACATAGCAATAGGAGCAGCTAAAGGTATAGCTTATCTGCACGAAGGGGTGAGACCAAGTATAATTCACCGTGACATAAAACCAAGCAACATCCTAATAGGAGACATGTTTGAGGTTAAAGTTTCAGATTTTGGGTTGATAAGATCGGGACCAATTGGTGATCAATCTCATGTTAGTAGTCAAATCAAAGGAACACCAGGATACCTTGATCCCTCTTATTGTTCAACCTTTCACTTAACTACTTTCAGTGACGTTTATAGTTTTGGTGTAATACTTCTCCAACTTATTTCTATTAGACCAGCTGTTGATGCCACAAAAACTCAAAATATTTCTCATATTATTGATTGGGCAAGACCTAGCATAGAGAAGGGTAACATTGAAGAAATTATAGACGTCAATTTACTATGTGAGCCTTGCAATATGAAGATCATGTTGAAGATGGGTCAGCTCGCCCTTAGATGTGGGGCTCAAGTGCCAAAGCATCGTCCTACAATGGCTCAAGTGTGCCAAGAGCTAGAAGAAGCTCTTCATGAAGCTGATAAATTGATTGGAAAACCACCTTCAAAGAATTATAGAAGATCTAGTAACACATCTCAAGAATTAACAAAATTAGAGGATCTCAAATCTATAGGTAACTATGACTCTTCACAGAGTTTTGTAAGCATAAATGGTGTTGGGTTTCAAAAGTTTCATATTGATATGGATAGTTTATCCTTTCAAAGTGAAAACTTAAGATGTCTAGAAAATAATAGTATTAGTATTGACACTGATGTCAACACTTTGAGGAGAATTCAAGAAGACAAGGCCAAGCAAAACTAG	1413	0.3836	MDNQHRHLLAAPPPETAKPPNSKSSYHLTLLVVFVSGILFFTVMVVSLLYCLIKRKSIPLKCMRSSKGGKDEKSLKYDNISLRRFDLEELKKATNNFSPDCFLGSGAFGTVYKGTFELEGTLAIKRAHGESFLSKAEFINEVRLISKVKHRNLVSLVGYCEEPGDGVQLLIYEYVPNGSLLEYMMGKRGKSLTWRQRVNIAIGAAKGIAYLHEGVRPSIIHRDIKPSNILIGDMFEVKVSDFGLIRSGPIGDQSHVSSQIKGTPGYLDPSYCSTFHLTTFSDVYSFGVILLQLISIRPAVDATKTQNISHIIDWARPSIEKGNIEEIIDVNLLCEPCNMKIMLKMGQLALRCGAQVPKHRPTMAQVCQELEEALHEADKLIGKPPSKNYRRSSNTSQELTKLEDLKSIGNYDSSQSFVSINGVGFQKFHIDMDSLSFQSENLRCLENNSISIDTDVNTLRRIQEDKAKQN	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi12g2116	470	Pfam	Protein tyrosine and serine/threonine kinase	103	370	IPR001245	GO:0004672\|GO:0006468
	Mibi12g2116	470	ProSiteProfiles	Protein kinase domain profile.	97	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi12g2116	470	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
	Mibi12g2116	470	Gene3D	Transferase(Phosphotransferase) domain 1	175	394	-	-
	Mibi12g2116	470	Gene3D	Phosphorylase Kinase; domain 1	61	174	-	-
	Mibi12g2116	470	MobiDBLite	consensus disorder prediction	1	21	-	-
	Mibi12g2116	470	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	68	174	-	-
	Mibi12g2116	470	SUPERFAMILY	Protein kinase-like (PK-like)	75	371	IPR011009	-
	Mibi12g2116	470	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	18	407	-	-
	Mibi12g2116	470	CDD	STKc_IRAK	103	372	-	-
	Mibi12g2116	470	Coils	Coil	363	383	-	-
	Mibi12g2116	470	ProSitePatterns	Protein kinases ATP-binding region signature.	103	125	IPR017441	GO:0005524
	Mibi12g2116	470	SMART	serkin_6	97	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi12g2116	Mibi-ChrMibi12	37558885	37560868	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi12g2116	31	374	Receptor kinase-like Gene Family	AT1G51880	42.029	9.86e-74	247

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Mibi12g2116		PK_Tyr_Ser-Thr	2e-40	CL0016