Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2081 ATGGCGGAGGAGAGATCAAGTGGCGTGGTCCAGTGGTTCAGCGATTCCAAAGGCTTCGGGTTCATCAAGCCCGACGATGGAGGAGAAGATCTCTTCGTCCATCAATCCTCGATCAGATCCGAAGGATATCGGAGTCTCGTAGAAGGCGATCGCGTCGAGTTCGTGATTGCCTCTGGCGACAACGAAAAGACCAAAGCCATCGATGTTACAGGGCCCAACGGAGCCCCCTTACAAGGTAAGAATAAAGACAATTACGGTGGTGGTCGCGATGGTGGCGGCTATGGATTTAGCGGTGGATGGAGAGGCGGCGATAGGCGTAATAGCGGAGGAGCTAGCGGTGCTGGCTGCTATCAGTGCGGCGATGTCGGCCACTTAGCCAGAGATTGCAACCGTGGAAACAACGCCGGTGGTGCTTCTTGTTTTAAATGTGGTGAAATTGGCCACTTGGCTAGGGATTGTCCACATGGAAATAATGGCGGCGGCGGTGGCGGGGCTTGCTTTAAGTGTCATGAGTATGGGCACATGGCGAGGGACTGCGACAAAGACACCGGAAGGTTTGGCGGCGGTGGCGGCGGTGGCGGTGGCGGTTGCTTCACTTGTGGTGAAATGGGTCACTTGGCTAGGGATTGCAACAAAGACACCGGAAGGTTTGGAGGCCGTGGAGGAGGCGGTGGCGCCGGAGGAAATGCATGCTTCAATTGTGGGAGGCGTGGGCATTTTGCGCGAGAGTGTCCTGAAGCTTCTACATGA 750 0.5587 MAEERSSGVVQWFSDSKGFGFIKPDDGGEDLFVHQSSIRSEGYRSLVEGDRVEFVIASGDNEKTKAIDVTGPNGAPLQGKNKDNYGGGRDGGGYGFSGGWRGGDRRNSGGASGAGCYQCGDVGHLARDCNRGNNAGGASCFKCGEIGHLARDCPHGNNGGGGGGACFKCHEYGHMARDCDKDTGRFGGGGGGGGGGCFTCGEMGHLARDCNKDTGRFGGRGGGGGAGGNACFNCGRRGHFARECPEAST 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2081 249 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Mibi12g2081 249 ProSiteProfiles Zinc finger CCHC-type profile. 116 129 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 SMART c2hcfinal6 196 212 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 SMART c2hcfinal6 115 131 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 SMART c2hcfinal6 230 246 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 SUPERFAMILY Retrovirus zinc finger-like domains 188 247 IPR036875 GO:0003676|GO:0008270
Mibi12g2081 249 MobiDBLite consensus disorder prediction 66 88 - -
Mibi12g2081 249 Pfam Zinc knuckle 165 181 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 Pfam Zinc knuckle 115 129 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 Pfam Zinc knuckle 196 211 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 Pfam Zinc knuckle 230 246 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 Pfam Zinc knuckle 140 155 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Mibi12g2081 249 SMART csp_8 7 72 IPR011129 GO:0003676
Mibi12g2081 249 Gene3D - 193 221 - -
Mibi12g2081 249 Gene3D - 224 249 - -
Mibi12g2081 249 Gene3D - 135 161 - -
Mibi12g2081 249 Gene3D - 162 186 - -
Mibi12g2081 249 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Mibi12g2081 249 Gene3D - 1 84 IPR012340 -
Mibi12g2081 249 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Mibi12g2081 249 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Mibi12g2081 249 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Mibi12g2081 249 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Mibi12g2081 249 Gene3D - 100 134 - -
Mibi12g2081 249 ProSiteProfiles Zinc finger CCHC-type profile. 231 246 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 ProSiteProfiles Zinc finger CCHC-type profile. 140 154 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Mibi12g2081 249 PANTHER COLD SHOCK DOMAIN PROTEIN 2 184 246 - -
Mibi12g2081 249 SUPERFAMILY Retrovirus zinc finger-like domains 156 184 IPR036875 GO:0003676|GO:0008270
Mibi12g2081 249 ProSiteProfiles Zinc finger CCHC-type profile. 197 210 IPR001878 GO:0003676|GO:0008270
Mibi12g2081 249 SUPERFAMILY Retrovirus zinc finger-like domains 108 157 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2081 Mibi-ChrMibi12 37310754 37311503 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mibi12g2081 CSD 2.7e-24 CL0021