Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2075 ATGTCATCGTCGTTATCCCGGGTGGCTCGTGGAGAGCACAAGTTTGAAGGGTTGGAGTAAAAGGTTGAATTTTTGTGGGAAATGGATCAGTGGAAACCTGAAGATTTGTCTAAATCTGCATCTATTGCGGCAGATTTAGCGCCTTCTTCTCTTCAGCCTCAGTCCCAACTTGTTACTGTCGCCTCTAATCGCTTGCAGAATTCGCATACCGAATCCAGGCAGAGGCCTGAGGCTGAAGCACAGGATCCAATTGCTGCAAGAAAACTCCAGAAGGCAGACCGCGAGAAACTGAGGAGGGATCGACTAAATGAGCATTTCCTAGAGCTGGGAAATACATTAGATCCAGATAGGCCAAAGAATGACAAGGCTACTATCCTTACAGACACAATTCAGGTGCTAAAAGATTTAACTGCCGAAGTCAATAAACTAAAAGCTGAGCATACTGCACTTTCTGAAGAATCACACGAACTAATGCAGGAGAAAAATGAACTCAGAGAAGAGAAGACGTCTCTAAAATCTGACATTGAAAATCTTAATGCACAGTATCAGCAGAGAGTGAGAGTCACATTCCCGTGGACTGCAATCGATCATTCAGTTGTCATGGCTCCACCGTATTCATATCCAGTTCCTATACCCATTCCTTCCGCTCCAATTTCCCTCCATCCGTCACTTCAGCCTTTTCCTTTCTTTGGAAACCAAAATCCAAGTCCGATTCCCAATCCCTGTTCAACATATGTCCCCTTTTCCGCTCCAGCCAATCCCCCAGTCGAGCAGCCAACTGGGCAGTATGCTTCAACGTCTTACACTTCAAGCAAACAAGATTCCAGAAGTAAGTCGTCAGATCATGAAAGGACAGGCAATGCTGAAAGATGTAGTGAGTCTAACGATGTAGCTACAGAGCTTGAACTTAAGATGCCTGGATCTTCATCACGGCAGGAATCATCTTCTGGAGCAAGGAAAGGCAAGCATTCATTAAGGAAGGAGAGAAATATCACAGATGGGAGTACTTCAAGCAGGCATTCTTCATCTCAAGGACCTCAAGATAGCTCCAACAGTGTGGGTGACATCCCGAAGTCTAAGTCATAA 1086 0.4512 MSSSLSRVARGEHKFEGLEXKVEFLWEMDQWKPEDLSKSASIAADLAPSSLQPQSQLVTVASNRLQNSHTESRQRPEAEAQDPIAARKLQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQVLKDLTAEVNKLKAEHTALSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRVTFPWTAIDHSVVMAPPYSYPVPIPIPSAPISLHPSLQPFPFFGNQNPSPIPNPCSTYVPFSAPANPPVEQPTGQYASTSYTSSKQDSRSKSSDHERTGNAERCSESNDVATELELKMPGSSSRQESSSGARKGKHSLRKERNITDGSTSSRHSSSQGPQDSSNSVGDIPKSKS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2075 361 Gene3D - 85 162 IPR036638 GO:0046983
Mibi12g2075 361 CDD bHLH_AtILR3_like 91 165 - -
Mibi12g2075 361 MobiDBLite consensus disorder prediction 335 361 - -
Mibi12g2075 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 136 IPR011598 GO:0046983
Mibi12g2075 361 SMART finulus 92 142 IPR011598 GO:0046983
Mibi12g2075 361 Coils Coil 126 181 - -
Mibi12g2075 361 MobiDBLite consensus disorder prediction 47 69 - -
Mibi12g2075 361 MobiDBLite consensus disorder prediction 255 274 - -
Mibi12g2075 361 Pfam Helix-loop-helix DNA-binding domain 87 136 IPR011598 GO:0046983
Mibi12g2075 361 MobiDBLite consensus disorder prediction 231 361 - -
Mibi12g2075 361 MobiDBLite consensus disorder prediction 47 83 - -
Mibi12g2075 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 157 IPR036638 GO:0046983
Mibi12g2075 361 MobiDBLite consensus disorder prediction 275 290 - -
Mibi12g2075 361 PANTHER TRANSCRIPTION FACTOR BHLH121 52 359 IPR044579 GO:0003700|GO:0055072
Mibi12g2075 361 MobiDBLite consensus disorder prediction 316 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2075 Mibi-ChrMibi12 37253157 37256068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2075 77 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.917 2.43e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi12g2075 HLH 8.4e-09 No_clan