Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2058 ATGCGTACTAGAAACGCCGCTTCTTCTAATACGGCGGCGGCGGCGGCGGCTAAGAAGACACCGCCGACGAGGAAATCTGCATCTAAAAGCCCGGCGAACACACAATCCCCCCAGACCATGCGCACCTCTACGATCAAAACTAGGCAAGCAAAGAAGAACGAGGCCTCGCCCTTACAAAACCCAACCTTTGATGAGGAACCTGAGCAATCATCTGAGGAGGCAAAAGCAGCGGCTGAAGCTCCTCAGGTGACACCAGAAACAAAAGTTGTTACAGCTGCAAAGTCAACACCAAAGAGGGCGCCCAGGAGAGCTGTGGGAAGACCTAGGAAGTCAACTAAGGCCGTTACTACCCAGGAACCGGAAGAACAAGAGGAGGCAGTAACTGATGAAACACCGAAAGTGGATAATATCGAAGAAGCTAAGAAATTGGAGGAGCCTCTAAATGTTGAGGTAGTCAAATCAGATGAAATTGAAACTAAAGAAGTTGGGGAGCAAGGTGTTGAGTTTGTTAGACAATCTGCAGGGAATGAGCAACATACCGAGGAAGGGGATGAGTGTAATGCTGATAGTGCCAGTGAATTAGCAGAAAATAAAAGTGACATAGTTGAAGCTGTAGTATCTGCATCCCAAGGTGTCCCTATTTTGTTGAATCAAGAAGGACCTACCATGGTAGAGCTATCCAAATCTCTGGAGAATGAAGAACACACTGGTGCAATAGAAGGAGAACAAACCAATGAAGGATCAGAAAAATCAACGAAAGAACAGACAACTAATATTGAATGTAAAAAGCAGTTTAATGCTGATTCTGTCAGTATGGAAATTGAAGACCAAAGAGAGCAAGTGAAGGAAGAGGATGGACAAATAGAATCAGAAAAATCACTGGAAAATGAGGGAGAAAAAGCATTAGAGAAATTCATGCAAGAGGAGACAGATAATATTATACATAGCCAGGAGTGTAATACAGATTCTGTTGAGAAGGAATTGTCAAAACAATTTCTTCAAGATGATGTTAAACCTGAAAAGGAGAATCTAAGTGTTGATCAAGGCACTGAGAGCTGCGGTGAAAGGTTGGACTGTGAAGAACAAGGGGAGGAGGGGTTTGTTGAGGATGATCCAGAGGAGCCTCTTGAAGAAGCTGAAACATTGGATGAGGAACGGAAGCAACTGTCAACTATGGCGAAGGAGCGCAAGGTTAGGAGAGAGAATGAAATATTTGTTGGTGGGCTTGATCGTGATGCAACAGAGGAAGATCTTAAAAAGGTTTTTGAGAAGATTGGGGAGATAGTTGAAGTTAGGTTGCATAAAAATTCTTCAACAAACAAAAATAAGGGCTATGCATTCGTTAAATTTTCTTGTAAGGAACAGGCAAAGAAAGCTTTGTCAGAAATGAAAAACCCTGTTATATGTGGTAAGCAATGTGGCACTGCACCCAGTGAGGATAATGACACATTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAATTGAAGGACTATGGCGTTGAGGGTGTTGAAAACGTTACACTTGTCCCAGATGCTCACCATGAAGGATTAAGCCGGGGCTTTGCATTCCTTGAGTTCTCCTGTCATCATGATGCCATGCTTGCCTATAAGAGGCTTCAAAAACCTGATGTAGTCTTTGGACATGCTGAGCGAACTGTCAAAGTAGCCTTTGCTGAACCTGCACGGGAGCTGGATCCTGAGATTATGGCACAGGTGAAGTCTGTTTTTGTTGATTGTCTCCCTCCTCATTGGGATGAAGGCCGCATTAGGGAGCACTTTAAAGGTTATGGTGAAATTGTACGAGTTGTACTTTCCCGGAACATGACTACTGCTAAGAGGAAAGATTTTGGATTTGTTGATTTCTCTACACATGAAGCTGCTGTAGCTTGCGTTGATGGTGTAAATAGCTCAGAATTTGTTGATGGAACACAAAAGACTAAAGTGAGAGCGAGACTTTCAAATCCTTTGCCTAAAACTCAGGCTGTCAAGGGAGGCATGTGTGGTGGGTTCCGAATTGGTCATGCTCGGGGTGGAGCCTTTCCGAGATCTGGAAGGGGTTTTACTCGTGGAGGACATGCTGTCAGTTGGGGAAATTTTAATAGGGGTAGAAATCTTTATCATGGAGGACGCGGTCAAATTGGTAGAAAGGGTTTCAGGAACAATCTTAATCTTAACAATGCTTATCCAGACTTTCATCAGAGGCAGTTTGGGGAACGGATGATTCCTTTGAGGGGTGGACATTATGCAGGTGCGCAAGGTGATGCAGTTGCTGGTCCATCTAGGCCTCATCTTGATAGAGCATGGTATGGCGCCCCTATTAGAGGCCCTGAACCTATCCCCCCAAGGATGCCATTCTCACCTGAAGGACAGTTTGATAGGCCTTTTATGGAAAGGCATATTGATGATCCATATCTTTATGAAGACAGTGTGCATGGGATGAAACGGCCATTTCACATGACTGACCCAGATCCTAGTTACTTGGGACCTGGTAGACTTCGTCCTCGACTAGATTATGCAGATCCTGCTGCATTTCCTGGTAGTCGTTTCCATGGCGGTTTATCTGGGTTCTGGAGTAAGATACAATATGTTTGTGTATTGAGAATGGGCTAG 2631 0.4405 MRTRNAASSNTAAAAAAKKTPPTRKSASKSPANTQSPQTMRTSTIKTRQAKKNEASPLQNPTFDEEPEQSSEEAKAAAEAPQVTPETKVVTAAKSTPKRAPRRAVGRPRKSTKAVTTQEPEEQEEAVTDETPKVDNIEEAKKLEEPLNVEVVKSDEIETKEVGEQGVEFVRQSAGNEQHTEEGDECNADSASELAENKSDIVEAVVSASQGVPILLNQEGPTMVELSKSLENEEHTGAIEGEQTNEGSEKSTKEQTTNIECKKQFNADSVSMEIEDQREQVKEEDGQIESEKSLENEGEKALEKFMQEETDNIIHSQECNTDSVEKELSKQFLQDDVKPEKENLSVDQGTESCGERLDCEEQGEEGFVEDDPEEPLEEAETLDEERKQLSTMAKERKVRRENEIFVGGLDRDATEEDLKKVFEKIGEIVEVRLHKNSSTNKNKGYAFVKFSCKEQAKKALSEMKNPVICGKQCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVENVTLVPDAHHEGLSRGFAFLEFSCHHDAMLAYKRLQKPDVVFGHAERTVKVAFAEPARELDPEIMAQVKSVFVDCLPPHWDEGRIREHFKGYGEIVRVVLSRNMTTAKRKDFGFVDFSTHEAAVACVDGVNSSEFVDGTQKTKVRARLSNPLPKTQAVKGGMCGGFRIGHARGGAFPRSGRGFTRGGHAVSWGNFNRGRNLYHGGRGQIGRKGFRNNLNLNNAYPDFHQRQFGERMIPLRGGHYAGAQGDAVAGPSRPHLDRAWYGAPIRGPEPIPPRMPFSPEGQFDRPFMERHIDDPYLYEDSVHGMKRPFHMTDPDPSYLGPGRLRPRLDYADPAAFPGSRFHGGLSGFWSKIQYVCVLRMG 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2058 876 MobiDBLite consensus disorder prediction 332 394 - -
Mibi12g2058 876 FunFam Heterogeneous nuclear ribonucleoprotein Q 567 717 - -
Mibi12g2058 876 Gene3D - 481 566 IPR012677 -
Mibi12g2058 876 MobiDBLite consensus disorder prediction 173 195 - -
Mibi12g2058 876 MobiDBLite consensus disorder prediction 23 65 - -
Mibi12g2058 876 Coils Coil 274 294 - -
Mibi12g2058 876 CDD RRM_SF 484 562 - -
Mibi12g2058 876 SUPERFAMILY RNA-binding domain, RBD 397 473 IPR035979 GO:0003676
Mibi12g2058 876 MobiDBLite consensus disorder prediction 272 298 - -
Mibi12g2058 876 SUPERFAMILY RNA-binding domain, RBD 480 649 IPR035979 GO:0003676
Mibi12g2058 876 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 482 567 IPR000504 GO:0003723
Mibi12g2058 876 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 242 837 - -
Mibi12g2058 876 SMART rrm1_1 581 656 IPR000504 GO:0003723
Mibi12g2058 876 SMART rrm1_1 483 563 IPR000504 GO:0003723
Mibi12g2058 876 SMART rrm1_1 403 476 IPR000504 GO:0003723
Mibi12g2058 876 FunFam Heterogeneous nuclear ribonucleoprotein Q 482 566 - -
Mibi12g2058 876 MobiDBLite consensus disorder prediction 1 141 - -
Mibi12g2058 876 MobiDBLite consensus disorder prediction 228 298 - -
Mibi12g2058 876 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 580 662 IPR000504 GO:0003723
Mibi12g2058 876 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 404 472 IPR000504 GO:0003723
Mibi12g2058 876 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 582 646 IPR000504 GO:0003723
Mibi12g2058 876 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 484 548 IPR000504 GO:0003723
Mibi12g2058 876 Gene3D - 350 476 IPR012677 -
Mibi12g2058 876 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 402 480 IPR000504 GO:0003723
Mibi12g2058 876 CDD RRM_SF 404 472 - -
Mibi12g2058 876 MobiDBLite consensus disorder prediction 362 380 - -
Mibi12g2058 876 MobiDBLite consensus disorder prediction 228 257 - -
Mibi12g2058 876 MobiDBLite consensus disorder prediction 127 141 - -
Mibi12g2058 876 CDD RRM_SF 582 646 - -
Mibi12g2058 876 MobiDBLite consensus disorder prediction 1 16 - -
Mibi12g2058 876 Gene3D - 568 726 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2058 Mibi-ChrMibi12 37098098 37103143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2058 404 648 Eukaryotic Initiation Factors Gene Family AT2G23350 25.301 7.91e-16 80.1