Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2056 ATGTCGTCCGCCGGAGAAGGTGATCGTGCTGCCGTTGATCAGCCTAAGGCAGTGATGAAGGAGAAGAAGCCCAAGGTTCCAAAGGAGAAGAAGTCCAAGAAAGCCAAAACAGTTTCTCATCCTCCTTACTTTCAGATGATCAAGGAGGCTTTGTTGGCTCTGAAGGAGAAGGGTGGTTCCAGCCCATACGCCATAGCCAAGTACATGGAGGAGAAGCATAAGTCTGTTCTTCCTGCGAATTTCAGGAAGATCTTGGCTCTTCAGCTTAAGAATCAGGCCGCGAGAGGCAAATTGATCAAGATCAAGGCTTCCTACAAGCTATCCTCTGACGCAGCCAAGGTCCCAAAGTCCACCACACAGAACACTAAGCGCTCTAAGCCAAGCGCGGCTAAGAAGACAGAGAAAGTGAAGAAGGCAGGGAAGAAAGTCGTTGCGATGAAGAAGACGAAGAAATCATCGAAATCTGCGAAGCCAAAGCAGCCAAAGTCACTGAAATCATCAGCAACCAAGAGGGCCAGAAAAGTGACTGCCTCTGCTTCATGA 543 0.4899 MSSAGEGDRAAVDQPKAVMKEKKPKVPKEKKSKKAKTVSHPPYFQMIKEALLALKEKGGSSPYAIAKYMEEKHKSVLPANFRKILALQLKNQAARGKLIKIKASYKLSSDAAKVPKSTTQNTKRSKPSAAKKTEKVKKAGKKVVAMKKTKKSSKSAKPKQPKSLKSSATKRARKVTASAS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2056 180 MobiDBLite consensus disorder prediction 1 40 - -
Mibi12g2056 180 MobiDBLite consensus disorder prediction 107 180 - -
Mibi12g2056 180 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 39 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi12g2056 180 PANTHER HISTONE H1 19 171 - -
Mibi12g2056 180 MobiDBLite consensus disorder prediction 111 126 - -
Mibi12g2056 180 SUPERFAMILY "Winged helix" DNA-binding domain 36 116 IPR036390 -
Mibi12g2056 180 Gene3D - 34 120 IPR036388 -
Mibi12g2056 180 PRINTS Histone H5 signature 26 47 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mibi12g2056 180 PRINTS Histone H5 signature 53 70 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mibi12g2056 180 PRINTS Histone H5 signature 125 139 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mibi12g2056 180 PRINTS Histone H5 signature 156 173 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mibi12g2056 180 MobiDBLite consensus disorder prediction 135 169 - -
Mibi12g2056 180 CDD H15 37 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi12g2056 180 Pfam linker histone H1 and H5 family 40 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi12g2056 180 SMART h15plus2 37 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2056 Mibi-ChrMibi12 37071092 37071733 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2056 41 123 Single Myb Histone (SMH) Gene Family AT1G72740 39.535 6.10e-09 52.4