Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2048 ATGGATAAGCCTCACCACCTCCTTCACCCTTCCCCCATGGACAAACCCTCTCTTCCCGATTCTCACAAACCCACCTCCTTTGACCCTTCTCACCACAACCTCCACCTGATTACCCTCGATCCCTCTCGCTCCGCCGGCGATGCCCACGATTCTCAGCTTCTCCCAGCTCCCCTCCCACTTTCCCGTGATTCTTCTGGCCTGAATATGCAGCTCAACGTTGCCGATGCCAGCTCTGGGAAACGAAAGCGTGGTCGGCCTGCTAGGGGTACTGTGAGGGAACCGCCATTGAAGAAGATGAGGGACGAGGAGGATGTCTGTTTCATTTGTTTCGATGGTGGTAGCCTTGTTCTCTGTGATCGTCGGGGTTGTCCTAAAGCATACCATCCAGCATGTATTAAGCGAGACGAGGCATTCTTCCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCATTTGTCGGAAGGCATCCCATTATATGTGCTACACATGTACATATTCTTTATGCAAGGGTTGTATAAAAGGAGCCGATTATCTCTGTGTCAGAGGAAATAAAGGTCTGTGCAGTATATGCATGAGGACTATAATGCTTATTGAGAACAGTCCTCAGGGAAACAAGGAAATGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGTTGTACTTGAAAGAGAAGATTTCATTAACATTAGATGAGATCCATCAAGCTAAAAACCCATGGAAAGGAGTTGCTGCTAATGGTTCTAGGTTAGAAATGCCTCATCAAATTCATATCCATAAAGATGACAAGGGTTCCGGGTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTAGAAAATAACCATTCTAACAGACAGCCAAGGCTGCTTAATATGGAGGAATGCCCAAATGTGAGCACTTCAGCTGGTGACAAAGATGCATCTATGTCTGAACGCAATAAATGGGCATCAAAGGAGTTTTTGGAGTTTGTTGCACATATGAAAAATGGTGATGCGTCTCTCCTGTCTAAGCATGATATCGAGACTCTCCTGCTGGATTATGTAAAGAAAAACAATCTTTATGATCCTCAACAAAAAAGCCAAGTTGTTTGTGATTCAAGGCTAGTCAATTTGTTCAGAAAGGAGCGCGTAGATCACTCTGAAATGTTGAAGCTTCTTGAACCTCATTTTCTTGTAAAGAATTGTGCCGCTGCCAATATTATAAGGTCTGGACCGATTGATGGTGTTGCTGGTAAGATGGAGGTTAATGACAATGGTAATGATAAGCCAGTTGTGGCTAATGATCAGAGACATGAAGCACGTAAAAGGGCTGAAGAGCTGCTAGATGATCCGGATGCGTGTGCTGCAATAAATGCTCACAACATTAACTTGATTTACTTGCAGCGTAATCAGATGGAGAATCTAATTGAAGATGCTGAGAACTTTAAAGACAAGGTTGTTGGTTCAATTGTGCGGATTAGAATCTCCAGTTGTGATCAAAAGCAAGAGATGTATAGGCTTGTACATGTTATAGGTACCAGCAATATTGCTGAATCTTACAATATTTGTTCAGGAACAACGGGCATTGCGCTTGAAATCTCTAATTTAAACAAGAAAGAGGTCATAAAAATAAGTGAAATTTCAGATCAGGCCTTCTCTGAGGATGAATGTAAACGGTTGCGCCAGAGCATAAAATATGGGTTTTCAAAAAGATTGACTGTGGGAGAGATTATGGAGAAGGCATTGACACTTCAAGCAATGAGAGCTAATGATTTGCTTGAAGGCAAAATGCTGCAGCTTAACCATCTTCGTGATAGAGCAAAGTGCACAGAGAAATTGCAGTCATTGAACTCACCTGAGGAACGACAGCGAAGGCTGCAAGAAATTCCAATAGTATATTCTGATCCAAATATGGATTCAATGTTTGACTCTGATGAAGATGTAAAGTCAGATGAAAGGAAGCAAGATGACAAAATACAATCTAAAAATTCTGGATTTAATAGAAGAGAGAGGGAACCTAGTTCTCCAAGAAGTCAGGATGGGGTGCTGAATGATGTTGGATGCAGAGCACTAGACATTTTGGTCACTGCCCATGAACAGATTGGGAATACCTGTACAATGAAGAACCAGACCAGCCCAAATGATGCAGCCAATGGTGATAGCAGTAATTTAGTGGTGGCAACTTCAGGGATGTCTGGTGTGGCAACAGGCATTCCATCTTTGCCTTTTCCTGCAGGAAAGGAGCAGCCAGTTAATGATCTTGCAACTGATGAGCTATGGCACTATCGGGATCCATCTGGGAAGATTCAAGGACCGTTTTCTTTGCTGCTGTTGTATAAGTGGAATGGTAGTGGGCATTTCCCTCCTAATCTTAGGATATGGAAGAACACTGAAAAGCAAGATGACTCTGTATTGTTAACTGATGTATTGAGTGGGAAGTGTTTTAAAAATGTGACATTGCCATGTAGTAGTCAGCTACTCTCTTTAGGGATTAGGGCTCAACAGGGCGACGAAGATGATGTCGATTTGCCAAGTTGCACTCCTGTAACCAGTTCCTCAACTTGTGTGGACTCTACATCTACTATTGTTCCTGCAAAAAAATCATCTCCAAAAAACCTACAAATTAGTTTTCTGGAGTTGCTTGGTGATGACTCTAAGCCAACCCATTCTGAACATACGGGTCAGTCTGCTGAAAATAAGCATTCCTGGAGTACTGCCTCCAGCTTAGTTGGTGATGGGACACCTCTTCCTGAGGTGACTGTTGAGTGGAGAAGATGTTCGCCAGCTCCGCCTAATCCTTCTGTTGAGGAATGGGACTCCAATCTTGTCTCTGCATCTTCATTGAAGCCTGCTGAAACTGTTGCTGATTGTACTGCTACTCCATCTTCAATATGTGATCAACTAACACATTCTTCCCCACCCAATCCAGCTTCTACGTGGCAGGCAATTATGGATGAACAAAATGAGTTTGGCTCATTTGATGATGAAACAGTTTCAGATCTGTTGGCAGAAATGGAGGCAATGGGGTCTCTTGGTGGCTTGGAATCTCCCTCTTCGATCATGAAATGTGGTGAGGAATTGACTGAGGGTTCTAATTGTCTCAGCCCTGCAGAGGGGCTTAGTCCAATGCCTGATGCCGGCAAAGGCGATGCACTGAGCTCCACAGGAGATTTACAGTTTCCCTCTCAATCCGCAGCACCAGAGGTACCATTATGCCAACCAGATGTACATTACCATCAAAGAATCTCTGGGGGGCATTCTGACAGAAATTCAGAAGTTGTTGGCACTAAGAATAGTGTTTCAGGTAATCAATGGAAGTCAGGTTCCGGAATTCCATCCACAGCAACCTGGGCCATGCCTACAGATCCTACTTGGAGACTCGGGCAAGACAGCAGAAGTGGTTGGGAGGCATCTCAGGTAAGTACGAACTTGGGCTGGGGTGGAATGGATAGTAATAATAATAAAGGAAATGCGAACACAAGTTGGGGAGTAGGACAGGGGGCAGTGCAGGAAAACAGGAACATAAGTTCATACTCTTCCACTGTAGGAACTCCTGGCGCTTTTGGGAACCAAACTAGATATGGCAGCGACCGGTTTTCTCCTCGTGGTAGGGACATGAATTCCAGTAGGGGTAGTAGACATTCCTGGAACAGGCAACCATTTGGTGGCGGAAATGGAGGCTCCCAAAGGCCTCCACCAAGAGGGCAGCGAATTTGTAAATTTCATGAAAGTGGGTACTGTAGGAAAGGAGCATCATGTGATTACTTGCACCCATGA 3789 0.4413 MDKPHHLLHPSPMDKPSLPDSHKPTSFDPSHHNLHLITLDPSRSAGDAHDSQLLPAPLPLSRDSSGLNMQLNVADASSGKRKRGRPARGTVREPPLKKMRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSICRKASHYMCYTCTYSLCKGCIKGADYLCVRGNKGLCSICMRTIMLIENSPQGNKEMCEVDFDDKSSWEYLFKVYWLYLKEKISLTLDEIHQAKNPWKGVAANGSRLEMPHQIHIHKDDKGSGSENSCIDIESNNLENNHSNRQPRLLNMEECPNVSTSAGDKDASMSERNKWASKEFLEFVAHMKNGDASLLSKHDIETLLLDYVKKNNLYDPQQKSQVVCDSRLVNLFRKERVDHSEMLKLLEPHFLVKNCAAANIIRSGPIDGVAGKMEVNDNGNDKPVVANDQRHEARKRAEELLDDPDACAAINAHNINLIYLQRNQMENLIEDAENFKDKVVGSIVRIRISSCDQKQEMYRLVHVIGTSNIAESYNICSGTTGIALEISNLNKKEVIKISEISDQAFSEDECKRLRQSIKYGFSKRLTVGEIMEKALTLQAMRANDLLEGKMLQLNHLRDRAKCTEKLQSLNSPEERQRRLQEIPIVYSDPNMDSMFDSDEDVKSDERKQDDKIQSKNSGFNRREREPSSPRSQDGVLNDVGCRALDILVTAHEQIGNTCTMKNQTSPNDAANGDSSNLVVATSGMSGVATGIPSLPFPAGKEQPVNDLATDELWHYRDPSGKIQGPFSLLLLYKWNGSGHFPPNLRIWKNTEKQDDSVLLTDVLSGKCFKNVTLPCSSQLLSLGIRAQQGDEDDVDLPSCTPVTSSSTCVDSTSTIVPAKKSSPKNLQISFLELLGDDSKPTHSEHTGQSAENKHSWSTASSLVGDGTPLPEVTVEWRRCSPAPPNPSVEEWDSNLVSASSLKPAETVADCTATPSSICDQLTHSSPPNPASTWQAIMDEQNEFGSFDDETVSDLLAEMEAMGSLGGLESPSSIMKCGEELTEGSNCLSPAEGLSPMPDAGKGDALSSTGDLQFPSQSAAPEVPLCQPDVHYHQRISGGHSDRNSEVVGTKNSVSGNQWKSGSGIPSTATWAMPTDPTWRLGQDSRSGWEASQVSTNLGWGGMDSNNNKGNANTSWGVGQGAVQENRNISSYSSTVGTPGAFGNQTRYGSDRFSPRGRDMNSSRGSRHSWNRQPFGGGNGGSQRPPPRGQRICKFHESGYCRKGASCDYLHP 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 1050 1069 - -
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 901 915 - -
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 269 295 - -
Mibi12g2048 1262 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 845 1262 - -
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 619 687 - -
Mibi12g2048 1262 SUPERFAMILY Plus3-like 461 589 IPR036128 GO:0003677
Mibi12g2048 1262 SMART rtf1 460 570 IPR004343 GO:0003677
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 1086 1122 - -
Mibi12g2048 1262 Gene3D SWIB/MDM2 domain 312 408 IPR036885 -
Mibi12g2048 1262 SUPERFAMILY GYF domain 759 814 IPR035445 -
Mibi12g2048 1262 Pfam GYF domain 764 804 IPR003169 GO:0005515
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 1091 1122 - -
Mibi12g2048 1262 CDD PHD5_NSD 105 150 - -
Mibi12g2048 1262 ProSiteProfiles Plus3 domain profile. 460 593 IPR004343 GO:0003677
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 78 92 - -
Mibi12g2048 1262 FunFam Zinc finger CCCH domain-containing protein 19 95 195 - -
Mibi12g2048 1262 CDD SWIB-MDM2_like 326 401 - -
Mibi12g2048 1262 SUPERFAMILY SWIB/MDM2 domain 325 402 IPR036885 -
Mibi12g2048 1262 SUPERFAMILY CCCH zinc finger 1237 1261 IPR036855 GO:0046872
Mibi12g2048 1262 Gene3D - 763 818 IPR035445 -
Mibi12g2048 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 194 IPR013083 -
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 1181 1241 - -
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 1 92 - -
Mibi12g2048 1262 ProSitePatterns Zinc finger PHD-type signature. 106 166 IPR019786 -
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 852 871 - -
Mibi12g2048 1262 Pfam SWIB/MDM2 domain 343 401 IPR003121 -
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 1181 1201 - -
Mibi12g2048 1262 ProSiteProfiles GYF domain profile. 761 815 IPR003169 GO:0005515
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 646 680 - -
Mibi12g2048 1262 Gene3D - 461 590 IPR036128 GO:0003677
Mibi12g2048 1262 ProSiteProfiles Zinc finger C3H1-type profile. 1237 1262 IPR000571 GO:0046872
Mibi12g2048 1262 SMART PHD_3 105 151 IPR001965 -
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 279 295 - -
Mibi12g2048 1262 Pfam Plus-3 domain 465 568 IPR004343 GO:0003677
Mibi12g2048 1262 ProSiteProfiles SWIB/MDM2 domain profile. 320 403 IPR003121 -
Mibi12g2048 1262 CDD GYF 761 816 IPR003169 GO:0005515
Mibi12g2048 1262 MobiDBLite consensus disorder prediction 887 918 - -
Mibi12g2048 1262 SMART gyf_5 762 817 IPR003169 GO:0005515
Mibi12g2048 1262 ProSiteProfiles Zinc finger PHD-type profile. 103 169 IPR019787 -
Mibi12g2048 1262 SUPERFAMILY FYVE/PHD zinc finger 99 150 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2048 Mibi-ChrMibi12 36868787 36874962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2048 103 183 PHD Transcription Factor Family AT4G14920 34.568 5.01e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mibi12g2048 Plus-3 1.9e-20 No_clan