Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2042 ATGGGAAGAGGGAAGATTGAAATCAAGCTCATAGACAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGGCGTAATGGTATCTTAAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAAAACAACAAAATGCACGAATATGTCACCCCTGGCTTTACAACCAAGAAGATGATTGATCAATACCAGAAGGCATTGGGGAATGTTGACTTGTGGTCTGTCCACTACGAGAGAATGCTGGAAAGGTTGAGGAAACTGCAAGAGATTAACAGTAAGCTGAGGGGAGAGATCAGGAATAGGTTGGGATCAGATTTGGACAATCTGAACTTTCAGCAACTACACAGTCTTGAGGAGGACATGATTTCTTCCTCTACAACGATACGTGAGAGGAAGCTTCATGTGATTAAAACTCGAACCGAGACCTGCAAGAAAAAGGTAAAAAACTTGGAGCAGGTGAACGAGAGTTTAGTGATTGGAATTAAGGACCAGTATATGGTGCATCCACATTACCTGATGATGTAG 549 0.4317 MGRGKIEIKLIDNPTNRQVTYSKRRNGILKKAHELSVLCDAKVSLIMFSKNNKMHEYVTPGFTTKKMIDQYQKALGNVDLWSVHYERMLERLRKLQEINSKLRGEIRNRLGSDLDNLNFQQLHSLEEDMISSSTTIRERKLHVIKTRTETCKKKVKNLEQVNESLVIGIKDQYMVHPHYLMM 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2042 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi12g2042 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi12g2042 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi12g2042 182 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mibi12g2042 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi12g2042 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mibi12g2042 182 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mibi12g2042 182 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Mibi12g2042 182 Pfam K-box region 84 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi12g2042 182 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Mibi12g2042 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi12g2042 182 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi12g2042 182 Coils Coil 85 105 - -
Mibi12g2042 182 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2042 Mibi-ChrMibi12 36822157 36823387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2042 1 166 MADS-box Gene Family AT3G54340 53.614 1.32e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi12g2042 K-box 2.1e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g2042 12 36822157 36823387 Mibi12g2042 12 36822157 36823387 ECH