Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2024 ATGGCGGGTCTCTTCTCACTAGGCGGCGGTGGAGGAGGAGGAGGTAGGGGAGGAGGTAACAGCCAAGAAGACGAACCCCACCACCACCAACAACACAATAATCCACCAACGGGAGTACCACATCCGGAGGCCTATTATTGGTACAAGAACAACAACAACAACAACAACGAAGAAGTGGCATGTTACAGGGGCTTCGAGCTATGGAACCAGCAACAATTGATGCCTCCACAGGCAGCAAGGCCTCTCCTCCCGCAAGATCTCTACTCCCTAGGGGTGGGCCCCAGCAGCCGCAGCTCCGATGATCACTCCTCCTCAAGATCGGGAGCCATAATGATGCGCGGAGGCGGAGGCGGAGGAAGCAGCAGCGGAGGAGGAGGAATAAGCTGCCAGGACTGTGGGAATCAAGCAAAGAAGGACTGCCCACACATGAGGTGCAGAACTTGCTGTAAGAGCCGTGGCTATGACTGCCAGACTCATGTCAAAAGCACTTGGGTCCCTGCCGCCAAACGCCGCGAACGACAACATCATCATCAACATCATCACCAGCAGCTAATAGCAGCTGCTGGGGACAACAATCCAAAGAGGCTGAGAGATACTAGTAATAATAATAACCCCACCACCACCTCCTCTCTTATGCATTTCCCTACTCACTCTTTATCTTCTTCACAAGGGTTGGAGCATGGGAGTTTTCCGTCAGTGGTTAGTTCATCGGCGGAATTCAGGTGTGTACGGGTTAGCTCCATGGACGAGGCTGATGAACAATACGCATATCAAACGGCGGTGAACATTGGGGGCCATGTTTTCAGAGGAATTCTCTATGACCAAGGACCTGATCCTAATTACATGTCCACCGCTGACACTTCTCCCGGCGGCGGAGTTCAGCCTCTGAATCTCATTGCCGCCACCGGAGCTTCTGCTCTTCCGGCTGCCGCCGTTGCCGGAGCTTCGTCTGCTACTACTGCGCCGCTTCTAGATCCTTCCTTGTATGCGCCGCCGCCACTTAACCCTTTCATGTCTGCCAGTGGTACGCAGTTCTTTCCTCACCCAAGATAG 1053 0.5385 MAGLFSLGGGGGGGGRGGGNSQEDEPHHHQQHNNPPTGVPHPEAYYWYKNNNNNNNEEVACYRGFELWNQQQLMPPQAARPLLPQDLYSLGVGPSSRSSDDHSSSRSGAIMMRGGGGGGSSSGGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQHHHQHHHQQLIAAAGDNNPKRLRDTSNNNNPTTTSSLMHFPTHSLSSSQGLEHGSFPSVVSSSAEFRCVRVSSMDEADEQYAYQTAVNIGGHVFRGILYDQGPDPNYMSTADTSPGGGVQPLNLIAATGASALPAAAVAGASSATTAPLLDPSLYAPPPLNPFMSASGTQFFPHPR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2024 350 MobiDBLite consensus disorder prediction 169 226 - -
Mibi12g2024 350 MobiDBLite consensus disorder prediction 1 49 - -
Mibi12g2024 350 MobiDBLite consensus disorder prediction 194 226 - -
Mibi12g2024 350 MobiDBLite consensus disorder prediction 91 106 - -
Mibi12g2024 350 MobiDBLite consensus disorder prediction 90 124 - -
Mibi12g2024 350 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 230 277 IPR006511 -
Mibi12g2024 350 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 128 170 IPR006510 -
Mibi12g2024 350 Pfam Domain of unknown function (DUF702) 126 278 - -
Mibi12g2024 350 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 335 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2024 Mibi-ChrMibi12 36498704 36500339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2024 1 339 C2H2 Transcription Factor Family AT5G66350 46.479 7.49e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mibi12g2024 DUF702 2.9e-64 No_clan