Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2013 ATGTTTCCCGGCAAAGAAATGCCTTCTGCATCCTCAATTTTCTCGGCTTATGCCTCCATGGCCGCCTCTGTCATGCTTTTTCGTTCCATGGCCAACGACCTCATACCTTATCCTATCCGAGGTTACCTCCTTAATGCTTTTAACTATTTGCTCAAAACTTCCTCCCCTGTTCTCACCCTCATCATCGAAGAATCCAATGGAATGTCTCGCAACCAAGTGTACGATGCTGCTGAATCTTACTTATCTGCTAGAATCAGTCCTGAAAACAAAAGGCTTAAGATCAGCCAGAGTCCTAAAGAGAAGTCCTTGAAGATTCGGCTCGAAAAGGGTGAGCAACTTGTGGATTATTATAATGGGATTGAGCTCAAATGGAAATTCACATGTACAGAATCATCAGGAAACAACGGCCATGGCCACAGTGATCATTTCAACATTAAGCGTTTCTTTGAGTTGAGTTTCCACAAGAAGCACAGGGAGATAGTGGTAAATTCTTATATTCCCTCCATCCTCAATAAGGCCAAGGCCATGAAAGAGGAGGAAAGGGTATTAAAGATGCATACTTTAAACACCTCCTGTGGTTATCCTGGTAGGTGGGATTCTATTAATCTTGAACATCCTTCCACCTTTGAGACTTTGGCTATGGAACCAGAGCTTAAGAAGGCTGTGATAGATGATTTGAACAGGTTTGTGAAGAGGAAGGAGTTTTACAAGAAAGTTGGGAGGGCATGGAAAAGAGGGTACTTGCTGTATGGGCCTCCTGGTACTGGGAAATCAAGCTTGGTTGCTGCCATGGCTAATTACTTGAAGTTTGATATCTATGACCTTCAACTTGAAAATATCGTCAGAGATTCTGACCTCAGAAGGCTTCTTCTGGCCACTGCTAATAGGTCCATTTTAGTGATTGAAGACATTGATTGCACTGTGGACCTGCCGGACCGACGCCAAGAAGGACGTGGCAAGCAGCCTGAGGCACCACAGAAGTTGACGTTGTCTGGGTTACTGAACTTCATAGATGGGCTGTGGTCAAGTTTTGGAGATGAGAGGATTATAATATTCACAACAAACCACAAAGAAAAACTAGACCCTGCTCTGTTACGCCCAGGAAGAATGGACATGCACATTCACATGTCCTATTGTTCCTACCATGGCTTCCAGCTTTTGGCCTCAAATTACTTGGGAATTTCCAGTAAGCAGCATGAGAATCTGTTTACAGAAATAGAAGGGCTCATAGATGACACAAACATAACACCTGCTCAAGTGGCAGAGGAGCTCATGAAGAGTGAAGATGCTAAGGAAGCACTTGAAGGCTTCGTGGGGCTCCTCAAGCGCAAGAAGATGGAAGGTGATGTGTGTGAGAATGATAGCTCATTAGAGAAAGCTTCGAGTCCTGAACCCAAAAAGAGGCGAAAAGCTGATACCTCCAAACAGGGGAAAACTGTGGGAGGCAGAAAGAGGAGTAGTTCAAGAAGGACAAGAAGAGGAAGAAGCTTGTAA 1494 0.4431 MFPGKEMPSASSIFSAYASMAASVMLFRSMANDLIPYPIRGYLLNAFNYLLKTSSPVLTLIIEESNGMSRNQVYDAAESYLSARISPENKRLKISQSPKEKSLKIRLEKGEQLVDYYNGIELKWKFTCTESSGNNGHGHSDHFNIKRFFELSFHKKHREIVVNSYIPSILNKAKAMKEEERVLKMHTLNTSCGYPGRWDSINLEHPSTFETLAMEPELKKAVIDDLNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDIYDLQLENIVRDSDLRRLLLATANRSILVIEDIDCTVDLPDRRQEGRGKQPEAPQKLTLSGLLNFIDGLWSSFGDERIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCSYHGFQLLASNYLGISSKQHENLFTEIEGLIDDTNITPAQVAEELMKSEDAKEALEGFVGLLKRKKMEGDVCENDSSLEKASSPEPKKRRKADTSKQGKTVGGRKRSSSRRTRRGRSL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2013 497 ProSitePatterns AAA-protein family signature. 348 366 IPR003960 GO:0005524|GO:0016887
Mibi12g2013 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 428 IPR027417 -
Mibi12g2013 497 SMART AAA_5 243 380 IPR003593 -
Mibi12g2013 497 MobiDBLite consensus disorder prediction 447 497 - -
Mibi12g2013 497 Gene3D - 199 374 IPR027417 -
Mibi12g2013 497 MobiDBLite consensus disorder prediction 447 479 - -
Mibi12g2013 497 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
Mibi12g2013 497 Gene3D - 375 448 - -
Mibi12g2013 497 CDD AAA 244 378 - -
Mibi12g2013 497 PANTHER BCS1 AAA-TYPE ATPASE 15 446 - -
Mibi12g2013 497 MobiDBLite consensus disorder prediction 482 497 - -
Mibi12g2013 497 Pfam ATPase family associated with various cellular activities (AAA) 248 377 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2013 Mibi-ChrMibi12 36403219 36405509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2013 171 376 Calmodulin-binding Proteins AT3G56690 27.273 3.76e-12 67.0