Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1994 ATGAATGATTTGATGACGAAATCGTTTCTAAGTTATGTTGAACTGAAGAAACAGGCCCGAAAGGACCTCGAAGGCGATCTTGACATTGAAGCAGGGCAATTCAACCCCATTGAAGACCAAAACCTTTCTCAGTTCTTTCAAGAAGTTGATGCCATAAAGTCCGAAATGGAAGAGATTACCAATCTCTTGTTCGATCTTCAGCACCTAAATGAAGAAACAAAATCAACCCACAGCACCAAAGTTCTTCGTGGGATCAGAGACCGAATGGAGTCAGACATGGTCACCATTCTTCGAAAGGCAAATACCATCAAGTCAAGGCTTGAATCGCTTGACCAATCCAACATAAAAAATCGCAAAGTATCAGAATCTTTTAAAGAAGGCACCCCAGTCGACAGAACAAGAACATCAGTCACAAGTGGACTAAGGGTCAAGCTTAGAGACTTGATGAACGAATTTATATCCTTGAGAAAGAAGATTCTATCTGATCACAAGGAGGATCTGAAGAGAAAATACTATGCTGCAACAGGGGTGATACCAAGCGATGAAGTAGTGGAGAAGATGGTTTCTGGTAGTGTCAAAGTTGATTTTTTCAAAACAACAGAAGCTGATATGACAGCTGAGACTCAATTTAGGCACCAGGCTGTGATGGATATACAGAGAAGTTTGGATAAACTTCATAAGGTTTTTCTTGACATGGCTATTATTGTGGAGACACAAGGCGAGAAAGTGGACAACATTGAAGACAATGTAGCCACTGCTAGGAGCTACGTTCATGGTGGAACTAACAGTCTTTACTATGCTAATCAGATAAGGAAGAACAAAAAATGGGCATGGTGGGTTTGTGCTGTGGCAGTGATTATTTTTCTGGTGTGCTTAATTGCCCTCTTAACTTCTTGA 897 0.408 MNDLMTKSFLSYVELKKQARKDLEGDLDIEAGQFNPIEDQNLSQFFQEVDAIKSEMEEITNLLFDLQHLNEETKSTHSTKVLRGIRDRMESDMVTILRKANTIKSRLESLDQSNIKNRKVSESFKEGTPVDRTRTSVTSGLRVKLRDLMNEFISLRKKILSDHKEDLKRKYYAATGVIPSDEVVEKMVSGSVKVDFFKTTEADMTAETQFRHQAVMDIQRSLDKLHKVFLDMAIIVETQGEKVDNIEDNVATARSYVHGGTNSLYYANQIRKNKKWAWWVCAVAVIIFLVCLIALLTS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1994 298 SMART tSNARE_6 200 267 IPR000727 -
Mibi12g1994 298 Gene3D - 198 297 - -
Mibi12g1994 298 Pfam Syntaxin 44 240 IPR006011 GO:0016020
Mibi12g1994 298 Pfam SNARE domain 241 290 IPR000727 -
Mibi12g1994 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Mibi12g1994 298 SUPERFAMILY t-snare proteins 40 260 IPR010989 GO:0016020|GO:0016192
Mibi12g1994 298 Coils Coil 52 72 - -
Mibi12g1994 298 Gene3D - 38 168 - -
Mibi12g1994 298 CDD SynN 42 191 IPR006011 GO:0016020
Mibi12g1994 298 PANTHER SYNTAXIN 43 288 IPR045242 -
Mibi12g1994 298 CDD SNARE_syntaxin1-like 206 264 - -
Mibi12g1994 298 FunFam Syntaxin 132 198 297 - -
Mibi12g1994 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Mibi12g1994 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1994 Mibi-ChrMibi12 36192890 36193786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1994 1 298 SNARE and Associated Proteins AT2G18260 60.912 1.18e-131 374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1994 12 36192890 36193786 Mibi12g1994 12 36192890 36193786 ECH