Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1990 ATGGGTACTTGTACCAGTGAAGTAACACTCATGCTACCAAATCCTTGCTCGTTCAAGGTGCATCGTACAATGTGCATGGAACTTAGGAGATTAGTTGATAGAATCTCAAAGATATTACCCGATATAGAGGCAACACGGCCTCGATGCTCATCGGGAATACAGTCTCTGTGCTCTCTGAACACTGCCATTGATAAGGCCAGACTCCTTCTGCAACATTGTTGTGATTGTAGCAAACTATACCTGGCATTGACGGGACATGCGATCCTCTTAAGATGCTTAAAAGCAAGAAATTCATTAGAGAAAAGCTTGGACAAAATTCAAAGTATGGTTTCAGTTATGTTGGCGGCAGAGATTTCTCAAATAATTGATGATCTGGGATGTGCAACATTTGTTCTGGACTCGTCGGAAGAAGAGGCTGGGAGGATTGTGAGAGAACTTCTCCAGAAAAGTCCTCCAGCATCATCGGATTCAATGGAAGATTCCGAGATTAAAGCTCTTCAGATTGCAGCAGTAAGACTTGATATTACATCCCGAAAGGCTATCTTAATAGAGAAAAGATCTATTAAGAAGTTGCTAAATAAACTTGGATCAAATGAACCGACTAAAAAAATGATCTTGAAGTATCTTTGGTATCTACTGAAAAAGTATGGAAACCATATCATGGGTTGTCAAATTGAAAAAGTCCATGCTCTGAGTGATGAACCAATTACAACTGATAAACCAAGTCACAGTCCTCCTCATAGTCATTGTGCTGGTCTACGTAGAACTCACATCCATGAGTTAAGCAGAGCTGCCTCCCCTGAGGAATACAGGTGCCCAATATCTTCAACGTTAATGTACGATCCCGTTGTTATTGATTCTGGGGTAACATATGAAAGGATGTGGATACAGAAGTGGTTTGATGAAGGTCATGTTATATGCCCAAAAACCGGGAAGAAATTGGCCAATATGTCACTGACACCACACATTGCAATGAAGGACATGATATCAAAATGGTGCAGAGATAATGGAGTCGTCATTACTGATCCTAGCAGGCGAGCAGAAAAGTTCAGTTCCCGAGAATCTTCTTTTGCTTCCATTAGGAGCTTTAACGTTTCATTGAATAAATTGAACCTGCCAATGGATCTTAGTATTGTGTCACTTGGATCAACAGATAGTTACGATTCAGATTCCTCTCAGACCCTAACTACTCATCACTTCAGTTTAAAGCTCGTGAGGACTGACGATAATTCTTACAATCATCAATCTCATGTACACAAAGATGGTGCAGATTCAATGCTTTTGTCTCAGTTCCATGAGCTTCAATGGGATTCTCAATGCCAGGTCATCGAAGATCTGGAAGTTTGTTTGAAAAGCAATTGCCAAGCTTTTAATTCTTTATCGGCTGAGGATTTCGGTGAATCACTCATCAAATTTCTGAACAATGCATATGACCTGCAAGACATAAAAGCTCTGAGATCGGGAATTCAGATGTTCTTAGAATTTGTAAACAAGCACAGAAACAGCCTAATGCATCTAAGTGAGAATTCATTCAGTGTGCTGGGAAATCTTCTTGACTCAGAAGTTAAAGGAGAAGCTCTTGCCATAATGGAAAAACTGTCCGAGTGTGAGCATAGTAGAGCTAAAATTGCAGCATCCGGTGCACTTGCTTCCATTTTCAAGATTCTTGGCTCCGAGAGCAGTGAGATCCAACAACAATCTATTCGAATAGTTTACAATTTGTCCTTTAGCAATGAAGCTTGTTACCACATGGCATCTCTCCAAGGCATCATCCCAGGATTACTGCCACTTTTTAAGGATGGGACTTTGTTAAGATACTGCCTATGCATATTGAAAAACCTGTGTGATACAGAAGTGGGTAGGGTTTCTGTTGCCAAAACAGAAGGATGCATATCTGCCATTGTTGAAATACTTGATATTGAGAGTGATGAGGAACAAGAACTTGCACTGGTTGTCTTACTCTCTATATGCTCTTTAAGTTCTGATTATTGTAAGCAGGTCATGGAGCAGGGGGAATGGGATTTTTCTTCCCTTTTCCTTATTGCCAATAATGGCAAAGGCAAAGTAAAGGTTAGTGCATTGAAGTTGCTCGGACTTTTGGAGGATGTTGTAAGAGTTGAGAATGAAGAATGCTTAAAACCAACTCCCAGCTCTTCTCAAGAACTTAACCATCACTCTCAACAAAAGAAAGCATCAAAACTTTGTGTATCTTTCAAGAAGTTTTTGGTTTCCTGCTTTACAGGTAAGAGATGA 2253 0.4017 MGTCTSEVTLMLPNPCSFKVHRTMCMELRRLVDRISKILPDIEATRPRCSSGIQSLCSLNTAIDKARLLLQHCCDCSKLYLALTGHAILLRCLKARNSLEKSLDKIQSMVSVMLAAEISQIIDDLGCATFVLDSSEEEAGRIVRELLQKSPPASSDSMEDSEIKALQIAAVRLDITSRKAILIEKRSIKKLLNKLGSNEPTKKMILKYLWYLLKKYGNHIMGCQIEKVHALSDEPITTDKPSHSPPHSHCAGLRRTHIHELSRAASPEEYRCPISSTLMYDPVVIDSGVTYERMWIQKWFDEGHVICPKTGKKLANMSLTPHIAMKDMISKWCRDNGVVITDPSRRAEKFSSRESSFASIRSFNVSLNKLNLPMDLSIVSLGSTDSYDSDSSQTLTTHHFSLKLVRTDDNSYNHQSHVHKDGADSMLLSQFHELQWDSQCQVIEDLEVCLKSNCQAFNSLSAEDFGESLIKFLNNAYDLQDIKALRSGIQMFLEFVNKHRNSLMHLSENSFSVLGNLLDSEVKGEALAIMEKLSECEHSRAKIAASGALASIFKILGSESSEIQQQSIRIVYNLSFSNEACYHMASLQGIIPGLLPLFKDGTLLRYCLCILKNLCDTEVGRVSVAKTEGCISAIVEILDIESDEEQELALVVLLSICSLSSDYCKQVMEQGEWDFSSLFLIANNGKGKVKVSALKLLGLLEDVVRVENEECLKPTPSSSQELNHHSQQKKASKLCVSFKKFLVSCFTGKR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1990 750 ProSiteProfiles U-box domain profile. 265 339 IPR003613 GO:0004842|GO:0016567
Mibi12g1990 750 CDD RING-Ubox_PUB 270 312 IPR045210 -
Mibi12g1990 750 Gene3D - 450 706 IPR011989 -
Mibi12g1990 750 Pfam U-box domain 267 336 IPR003613 GO:0004842|GO:0016567
Mibi12g1990 750 SMART Ubox_2 269 332 IPR003613 GO:0004842|GO:0016567
Mibi12g1990 750 SUPERFAMILY ARM repeat 510 700 IPR016024 -
Mibi12g1990 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 341 IPR013083 -
Mibi12g1990 750 PANTHER U BOX DOMAIN-CONTAINING 23 700 - -
Mibi12g1990 750 SUPERFAMILY RING/U-box 265 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1990 Mibi-ChrMibi12 36180071 36183249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1990 15 710 U-box Gene Family AT4G36550 37.196 1.10e-131 405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1990 12 36180071 36183249 Mibi10g0050 10 832532 836052 CCT
Mibi12g1990 12 36180071 36183249 Mibi12g1990 12 36180071 36183249 ECH
Mibi10g0050 10 832532 836052 Mibi12g1990 12 36180071 36183249 ECH