Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1979 ATGATGCACCGTTGCCGTGGCTCCCATCAAGGGCACGTGATGGGACCTTGCTCATGTGGTATGATTCACCATAACCAAACCAATTCCTTCTCTATGCTCTTCTCCAAATCCTTCGCTGACTCCGACATGTATTCTTCCTCCTCTTCCGTTGACTGTACCCTCTCTCTGGCCACTCCATCCTCACGTTTATCCCAACAAGACCAAGACAAACACAACAACCTCCATGAGCATCGATCCGTCTCAAACTTCTGTTGGGATTTATTACAATCCAAACACACCTCTCATCATTCCCACAATACTAAAACCGCTCGCACCACCAACACTAACAACTCCAATAACAATAATAACGACCCCCTCCTCGCTCGCCGATGCGCTAACTGTGACACCACTTCAACCCCACTCTGGAGAAACGGCCCCAGAGGCCCCAAGTCGTTGTGTAATGCGTGTGGGATAAGGTTCAAGAAGGAGGAGAGGAGGGCGGGGGCGGTGGCGGCCACGACGGCGGCGAGCTCAGGCAGCGTTATGGAGACGGCGGCGCAGATGTTTAGTAACGGAAATCATAACAGTACGTGGTACGGACAATCTCATCAGGGACAGAAAATGATGGGGAATGAGTTTCACTTTTTGGACGAAGAGGGCGACCGTGAAGCCATTCCGTTTCTCTCTTGGAGGCTTAACGTTACGGACAGACCAAGCCTTGTTCATGATTTTACGAGATGA 720 0.5083 MMHRCRGSHQGHVMGPCSCGMIHHNQTNSFSMLFSKSFADSDMYSSSSSVDCTLSLATPSSRLSQQDQDKHNNLHEHRSVSNFCWDLLQSKHTSHHSHNTKTARTTNTNNSNNNNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAGAVAATTAASSGSVMETAAQMFSNGNHNSTWYGQSHQGQKMMGNEFHFLDEEGDREAIPFLSWRLNVTDRPSLVHDFTR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1979 239 MobiDBLite consensus disorder prediction 95 119 - -
Mibi12g1979 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 159 - -
Mibi12g1979 239 ProSitePatterns GATA-type zinc finger domain. 124 149 IPR000679 GO:0006355|GO:0043565
Mibi12g1979 239 SMART GATA_3 118 172 IPR000679 GO:0006355|GO:0043565
Mibi12g1979 239 CDD ZnF_GATA 123 155 IPR000679 GO:0006355|GO:0043565
Mibi12g1979 239 MobiDBLite consensus disorder prediction 100 119 - -
Mibi12g1979 239 PANTHER GATA TRANSCRIPTION FACTOR 18 11 239 IPR044272 GO:0003700|GO:0009908
Mibi12g1979 239 Gene3D - 120 180 IPR013088 GO:0006355|GO:0008270
Mibi12g1979 239 ProSiteProfiles GATA-type zinc finger domain profile. 118 154 IPR000679 GO:0006355|GO:0043565
Mibi12g1979 239 Pfam GATA zinc finger 124 158 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1979 Mibi-ChrMibi12 36081298 36082136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1979 18 239 C2C2-Gata Transcription Factor Family AT3G50870 41.924 1.50e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi12g1979 GATA 5.7e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1979 12 36081298 36082136 Mibi10g0054 10 910453 911452 CCT
Mibi12g1979 12 36081298 36082136 Mibi12g1979 12 36081298 36082136 ECH