Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1962 ATGTCGGTCTTCTTCCAGCAAAGAAAAGACTCTGCAATATTTTATGTAATTTACTTCTGTTTTGTTTCCATTCCTTTTTGTAGAATCTTTTCTATAACTTTCTTCAGTCGTCAAGTTCCTTCTTTCTCTGGCTTCTCTCGTAGGGCTTCGTCTCCTCTGCGTTTCAAAAAAGGTAAACCCGTTCTGTTCGAATCGCACATTTTCCTTCCTCATTTATCCTTTTTCTGCTGCTCCATTATTTCTCTGTTAGGACTCAGAATGGAGAATGGAGTGAAGAGCAATGGAAATGCAAAGTCGCCGACTTTGGTAGAAAAGAATGAGGTGGAGACGGAGGAGGCAGATGTTAAGAATGACGAGCCTTTTATATCAAGGTCGATGGAAGAAGAGGAAAAACAGCTTTTGAAAATTCGAACCAAGGAAGAGGACGAGGAATCCAAACATGAGCCAGATGAAGCACCAAAGCTCAATGAAACTCAGTTTAGCAAGTTGGATGAGCTTTTAACGCAAACCCAACTTTACACTGAATTTCTACTGGAGAAAATGGATGACATCACACTTAATGGGGGCGAACAAGAGGATGAGCCGGTTGAGAAAAAGAGGGGCCGCGGCTCAAAAAGAAAAGCACGGTCAGAATATAATAATAAGAAAGCCAAAAGAGCAGTAGCTGCCATGCTCAAAAGATCAAAAGAAAGTGAGAGTGCTGAAGATATGAACCTGACAGAAGAGGAAAGAACTGATAAGGAGCAGAAAGAGCTCATACCTCTCTTAACGGGTGGAAAGTTGAAGAATTATCAACTTAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTAGGGAAGACAATCCAAACTATTGGTTTCCTTGCACATCTGAAAGGGGAATCTTTGCATGGCCCTTATTTGATAATTGCTCCTCTATCTACCCTTTCTAATTGGATGAGTGAAATTTCTCGGTTTGCTCCAACACTCACTGCTATTATTTACCATGGTGACAAGAAGGATAGAGATGAGATCCGAAGAAAGCACATGCCCAGGACAGTTGGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCGTTAAATGATGCTAAGAAATATCTTAGGTTCTACCATTGGAAATATATTGTAATTGACGAGGGACACAGGCTCAAAAACTCTAAATGCAAATTAGTCCAGATGTTGAAATTCTTGCCTGTTGAAAATAAACTTCTTTTAACTGGGACACCTCTTCAGAATAACTTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAGTTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCAACAAAAGAAGAATTAGAAGAAGGAAGAAGAGCTCAGGTGGTAGCTAAGCTCCATGCCATCCTGCGTCCCTTTCTTCTCCGAAGGATGAAAAGTGACGTTGAGCAGATGTTGCCACGAAAGAAAGAAATCATTATATATGCCAGTATGACTGAACATCAGAAGAATTTTCAGGAGCATTTAATTAATAAGACATTGGGGGAATATCTCCTTGAAAAATCTGCAGGGGGACGTGCTTCAAAATATCTTCGTAATTTGGTCATTCAGCTTCGAAAGAACTGTAATCATCCTGACCTCTTGGAGTCAGCCTTTGATGGTTCCTTTCTCTATCCACCCCTCAATGAGATAGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGACTGTTGGCTCATTTATTTGCACAGAAGCACAAAGTACTGATCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAAGGGCTTTGAAGTTTGCAGAATTGATGGCAGTGTAAAGCTAGATGAAAGGAAAAGACAGATTCAGGAGTTCAATGATGTGAATAGCAATTACAGGATCTTTCTTCTCAGTACTAGGGCTGGTGGATTGGGAATTAATCTTACTGCAGCTGATACTTGTATCATTTATGACAGTGATTGGAATCCTCAGATTGATTTACAGGCTATGGATAGATGTCACAGAATAGGCCAAACTAAGCCTGTTCATGTTTACAGGCTTGCGACAGCTCACTCCGTGGAGGTACATGGCTACACTGTATTGTTGTTTAGTATTGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTCATCAAGAACGCATGAAGCCTGACTCTGCGGAAATCAGAGAGGAGGATGAGGAATTGCTGGCAATGCTTCAAGAGGAAGAATCTGCTGAAGACAAAGCAATCCAAACAGATATCAGCGATGAAGACTTGGAGAAGCTTTTGGATCGCAGTGATCTCGTCTCTGGTAACTTAAATTCGCCGAGCAAAATTCCTCTTAAAGGGCCTGGGTGGGAGGTGGTGATTCCAACTGGGAGCGTGCTTTCTACTCTTAACAGCTAA 2502 0.4113 MSVFFQQRKDSAIFYVIYFCFVSIPFCRIFSITFFSRQVPSFSGFSRRASSPLRFKKGKPVLFESHIFLPHLSFFCCSIISLLGLRMENGVKSNGNAKSPTLVEKNEVETEEADVKNDEPFISRSMEEEEKQLLKIRTKEEDEESKHEPDEAPKLNETQFSKLDELLTQTQLYTEFLLEKMDDITLNGGEQEDEPVEKKRGRGSKRKARSEYNNKKAKRAVAAMLKRSKESESAEDMNLTEEERTDKEQKELIPLLTGGKLKNYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGESLHGPYLIIAPLSTLSNWMSEISRFAPTLTAIIYHGDKKDRDEIRRKHMPRTVGPKFPIVITSYEVALNDAKKYLRFYHWKYIVIDEGHRLKNSKCKLVQMLKFLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEGRRAQVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYASMTEHQKNFQEHLINKTLGEYLLEKSAGGRASKYLRNLVIQLRKNCNHPDLLESAFDGSFLYPPLNEIVEQCGKFRLLDRLLAHLFAQKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQIDLQAMDRCHRIGQTKPVHVYRLATAHSVEVHGYTVLLFSIGRMLKRAFSKLKLEHVVIGKGQFHQERMKPDSAEIREEDEELLAMLQEEESAEDKAIQTDISDEDLEKLLDRSDLVSGNLNSPSKIPLKGPGWEVVIPTGSVLSTLNS 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1962 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 491 IPR027417 -
Mibi12g1962 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 799 IPR027417 -
Mibi12g1962 833 MobiDBLite consensus disorder prediction 96 124 - -
Mibi12g1962 833 FunFam ATP-dependent DNA helicase DDM1 255 500 - -
Mibi12g1962 833 CDD SF2_C_SNF 573 707 - -
Mibi12g1962 833 Pfam SNF2-related domain 264 561 IPR000330 GO:0005524|GO:0140658
Mibi12g1962 833 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 441 IPR014001 -
Mibi12g1962 833 MobiDBLite consensus disorder prediction 223 246 - -
Mibi12g1962 833 MobiDBLite consensus disorder prediction 136 160 - -
Mibi12g1962 833 Coils Coil 126 146 - -
Mibi12g1962 833 SMART helicmild6 613 697 IPR001650 -
Mibi12g1962 833 PANTHER SNF2/RAD54 HELICASE FAMILY 107 778 - -
Mibi12g1962 833 FunFam Chromatin complex subunit A 106 501 739 - -
Mibi12g1962 833 MobiDBLite consensus disorder prediction 136 158 - -
Mibi12g1962 833 Coils Coil 760 780 - -
Mibi12g1962 833 Gene3D - 262 492 IPR038718 -
Mibi12g1962 833 SMART ultradead3 257 452 IPR014001 -
Mibi12g1962 833 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 587 744 IPR001650 -
Mibi12g1962 833 MobiDBLite consensus disorder prediction 187 216 - -
Mibi12g1962 833 MobiDBLite consensus disorder prediction 104 124 - -
Mibi12g1962 833 MobiDBLite consensus disorder prediction 187 246 - -
Mibi12g1962 833 Pfam Helicase conserved C-terminal domain 586 697 IPR001650 -
Mibi12g1962 833 Gene3D - 497 808 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1962 Mibi-ChrMibi12 35885237 35897515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1962 230 714 RAD5 or RAD16-like Gene Family AT1G02670 25.543 1.32e-39 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi12g1962 SNF2_N 6.1e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1962 12 35885237 35897515 Mibi12g1962 12 35885237 35897515 ECH