Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1948 ATGCCAGTTGATTTAGATAATTCTTCAACAGCTTCAGGGGAAGCTAGCGTCTCTTCCTCTGGCAATCAGACTGCTCCTACAAAGTCCACTGCTAAGAAGAAGAGAAATCTTCCAGGAATGCCAGATCCAGATGCGGAGGTGATTGCACTGTCTCCGAAAACCCTTTTGGCGACGAACCGATTCGTGTGTGAAATCTGCAACAAAGGGTTTCAGAGGGATCAGAATCTTCAACTTCATCGAAGGGGTCATAATCTGCCATGGAAGCTGAGGCAGAGGTCAAGCAAGGAGGTGAGGAAAAGAGTCTATGTATGTCCTGAGCCAACATGTGTTCATCATGATCCCTCTAGAGCTTTAGGTGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACATGGCGAAAAGAAGTGGAAATGTGACAAGTGTTCAAAGAAATATGCTGTTCAGTCAGATTGGAAGGCTCACTCGAAGATTTGTGGTACCAAAGAGTACAAATGCGATTGTGGGACTCTGTTCTCAAGGAGGGATAGCTTCATCACACACAGGGCATTTTGTGATGCGTTGGCAGAGGAAAGTGCAAGAAATCAACCTCAGCCTCAGACTCAGACTCAAAACCAGACTCAAGCTCCTGAGAAGCCTAATTCAGAGTCAGACCCAAAAATCATAACCGGAGATTCACCCCTTACAGTTCCGGCGCCGGCGCCGGCGCCACCACCACCGCCACCACCTACGGCACCGCCTCCCGCTGCTCAGTCAAATAACGTCATGCCACCTACCTTGCAGACGAAAAATCCAGAGTTGCCGGAAAATCCCTCTCAGATCATTGAGGAACCACAGGCCACTACTGCTTTGAATGGTAGCTGTAGCAGCAGTAATAGCTCAGGCAGCAATGGCGGAACCAGCAGTACTGTATTTGCAAGCTTGTTTGCTTCCTCCACTGCATCTGGAAGCCTTCAACCTCCTCCTCAACCTCAAGCTCCTCCTGCATTTACTGACCTAATTCGGGCTATGGCTCATCCCGATCGTCCAGCAGACCTCTCAGGGCCTTCATCTTCAGAACCCATTTCTCTCTGCCTCTCCACTAGCAATGGGTCATCAATCTTTGGAACTGGAGGGCAAGAACGTCGCCAGTATGCCCCTCCGCCACAACCAGCCATGTCTGCCACTGCGCTATTACAGAAAGCTGCTCAAATGGGCGCAGCAGCAACGAATGCATCATTGCTTCGCGGGTTCGGCTTTGTGTCATCTTCCCCTTCATCTTCATCATTAAGCTTGCAAGATAACATGCCATGGGGTCAGAGGCAAGTAGAACCAGAGAATGCCACTGTTCATGCCGGACTTGGACTTGGACTCCCATGTGATGGTGGATCTGGACTAAAGGAATTGATGATGGGGACGCCCTCCGTGTTTGGCCCAAAGCATACGACACTCGATTTTCTGGGGCTGGGGATGGCTGCTGGTGGTGCCGCCCCAACCGGAGGCTTATCAGCACTCATAACTTCCATTGGTGGTGGTCTTGATGTCTCTGCCACGGCAACACCTTTTGGTGGTGGAGACATTTCAGGTAAAGATATTGGGAGGAGCTCGTGA 1590 0.5013 MPVDLDNSSTASGEASVSSSGNQTAPTKSTAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARNQPQPQTQTQNQTQAPEKPNSESDPKIITGDSPLTVPAPAPAPPPPPPPTAPPPAAQSNNVMPPTLQTKNPELPENPSQIIEEPQATTALNGSCSSSNSSGSNGGTSSTVFASLFASSTASGSLQPPPQPQAPPAFTDLIRAMAHPDRPADLSGPSSSEPISLCLSTSNGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGFGFVSSSPSSSSLSLQDNMPWGQRQVEPENATVHAGLGLGLPCDGGSGLKELMMGTPSVFGPKHTTLDFLGLGMAAGGAAPTGGLSALITSIGGGLDVSATATPFGGGDISGKDIGRSS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1948 529 MobiDBLite consensus disorder prediction 1 45 - -
Mibi12g1948 529 Gene3D Classic Zinc Finger 115 195 - -
Mibi12g1948 529 Gene3D Classic Zinc Finger 41 107 - -
Mibi12g1948 529 MobiDBLite consensus disorder prediction 254 271 - -
Mibi12g1948 529 MobiDBLite consensus disorder prediction 190 271 - -
Mibi12g1948 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Mibi12g1948 529 MobiDBLite consensus disorder prediction 193 222 - -
Mibi12g1948 529 SUPERFAMILY beta-beta-alpha zinc fingers 133 174 IPR036236 -
Mibi12g1948 529 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Mibi12g1948 529 SMART c2h2final6 61 83 IPR013087 -
Mibi12g1948 529 SMART c2h2final6 102 132 IPR013087 -
Mibi12g1948 529 SMART c2h2final6 137 157 IPR013087 -
Mibi12g1948 529 MobiDBLite consensus disorder prediction 230 253 - -
Mibi12g1948 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 486 IPR031140 -
Mibi12g1948 529 FunFam protein indeterminate-domain 12-like 40 108 - -
Mibi12g1948 529 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Mibi12g1948 529 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1948 Mibi-ChrMibi12 35730797 35733119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1948 1 529 IDZ Gene Family AT5G66730 59.669 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi12g1948 None None None