Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1938 ATGAATCCTCATCCTATTGAAGATCACATGGTGCTTGTCTCTCAGCTATACCCTGGTGCTTACTCTCATCAAATAATTCCTCAACAAGGGGAGACAAAGACTAGACGACGTCGTAAGAAGAACAATAAGGGAGGAGAAAACGGAGGAGAGGGAGGAATAAAGAAGAGGAAGCTGAGTGATGAACAAGTGAATCTGCTGGAAAAAAACTTTGGGAACGAACATAAATTGGAATCTGAAAGGAAAGACAAGCTGGCGATGGAGCTAGGCTTGGATCCACGTCAAGTGGCTGTTTGGTTTCAAAACCGAAGAGCTCGTTGGAAGAACAAGAAGTTGGAAGAAGAGTACTCTAACCTTAAGAAAGTCCATGAGTCCACTATTCTCGAGAAATGTCGCCTTGAAACTGAGGTGCTGAAGCTGAAGGAGCAGCTTTCAGAGGCGGAGAAAGATATTCAACGACTTCTGGAACGAGCCGATAGGGTATCAAGCAGTAACAGCCCCAGTTCGTCACAGTCCATGGAAGCTGTGAACCCATCATTTTTGGGAGATCTTAGGACTGAGGCTTATGACGATGATGTGTTTTACATGCAACAGAACCATTATTACATGAATGGCATGGACGAGTGGATATTCATGTGA 636 0.4434 MNPHPIEDHMVLVSQLYPGAYSHQIIPQQGETKTRRRRKKNNKGGENGGEGGIKKRKLSDEQVNLLEKNFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKVHESTILEKCRLETEVLKLKEQLSEAEKDIQRLLERADRVSSSNSPSSSQSMEAVNPSFLGDLRTEAYDDDVFYMQQNHYYMNGMDEWIFM 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1938 211 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Mibi12g1938 211 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Mibi12g1938 211 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Mibi12g1938 211 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Mibi12g1938 211 SUPERFAMILY Homeodomain-like 53 117 IPR009057 -
Mibi12g1938 211 Coils Coil 101 128 - -
Mibi12g1938 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 173 IPR045224 GO:0003700
Mibi12g1938 211 MobiDBLite consensus disorder prediction 43 58 - -
Mibi12g1938 211 MobiDBLite consensus disorder prediction 23 58 - -
Mibi12g1938 211 Pfam Homeodomain 55 108 IPR001356 GO:0003677
Mibi12g1938 211 Coils Coil 136 163 - -
Mibi12g1938 211 Gene3D - 45 118 - -
Mibi12g1938 211 SMART HOX_1 52 113 IPR001356 GO:0003677
Mibi12g1938 211 CDD homeodomain 54 110 IPR001356 GO:0003677
Mibi12g1938 211 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1938 Mibi-ChrMibi12 35686709 35688340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1938 1 211 Homeobox Transcription Factor Family AT2G18550 52.655 4.67e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mibi12g1938 Homeodomain 2.4e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1938 12 35686709 35688340 Mibi10g0074 10 1188037 1189384 CCT
Mibi12g1938 12 35686709 35688340 Mibi12g1938 12 35686709 35688340 ECH