Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1924 ATGCATATACGCGCACGCACGCACATGGCCTCTCAAAGCTTCAATTCTTCTCTCTGTCACTTTGCTTTTGCTGTTGCAATCCTTGTCATTTTTGGCCCAGCCATTAGTTCTGCCAATGCGATTGGGTTGGACATGAATGTGATTGATAAGTGTTGGAGAACGAACCCCGACTGGCGTAGACATCGCCCTCAACTTGCAACTTGTTCTATTGGCTACGCCGGGAAGATGACCAACAACATTGGCAAAGACCTCATCCATTACAAGGTCACTGATCCTAGTGACGACCCAATAAACCCCAAACCAGGCACGTTGAGATATGGAGCTTCCATGATTCAAGGCAAAGTGTGGATCACATTCAAAAGAGACATGAATATCAAACTTCTCAGGCCTCTTCTCATCAGTAGCTTCACCGCCATCGATGGCCGAGGCGTCAACATTAACATTGCTCATAACGCATGCTTGATGATCTACAAGGCGACCAACGTAATAATTCATGGTATTCGGGTACATCACTGCAAGGCTCAGGTTGCATCAATGGTGATGGGTCCAGAAGGGAAGGTAATTCAGGTAGGTCAGGTGGATGGGGATGCGATCAGATTGGTTACAGCCTCCAATGTATGGATTGACCATAATACGCTCTATGATTGCCAAGATGGTCTTCTTGATGTTACGAGAGGTTCCACCAACGTGACCATCTCTAACAATTGGTTTAGAGACCAAAACAAGGTTATGCTTCTCGGACACGACGATGGTTACGCTAGGGACAAGAACATGAAGGTCACCGTGGTGTACAACCATTTTGGACCTCACTGCAGCCAACGTATGCCTAGAATTCGTTATGGGTACGCACATGTTGCCAACAATCTATACCAAGGATGGGTTCAATACGCCATTGGCGGAAGCATGGGACCCAGCCTCAAAAGTGAATCCAACCTCTTTATAGCACCAACTTCTGGAAGCAAAGAGGTGACATGGAGAAAAGCGAGCAATGGGAATATGGGAGCGTGGGAATTCCATTCGGTGGGGGATGTGTTTGAAAACGGAGCATGCTTCACACAAAGCAAAGGAGGGCGTGTGCCTAAACCTAATTATAACAGCGAACAGATTTTTAAAGTTGCAGATGCCAAATATGTGAGGGCATTGACAAGATCATCAGGCGCCTTACGTTGCACCAGGACCTCCACATGTTGA 1191 0.4685 MHIRARTHMASQSFNSSLCHFAFAVAILVIFGPAISSANAIGLDMNVIDKCWRTNPDWRRHRPQLATCSIGYAGKMTNNIGKDLIHYKVTDPSDDPINPKPGTLRYGASMIQGKVWITFKRDMNIKLLRPLLISSFTAIDGRGVNINIAHNACLMIYKATNVIIHGIRVHHCKAQVASMVMGPEGKVIQVGQVDGDAIRLVTASNVWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFRDQNKVMLLGHDDGYARDKNMKVTVVYNHFGPHCSQRMPRIRYGYAHVANNLYQGWVQYAIGGSMGPSLKSESNLFIAPTSGSKEVTWRKASNGNMGAWEFHSVGDVFENGACFTQSKGGRVPKPNYNSEQIFKVADAKYVRALTRSSGALRCTRTSTC 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1924 396 Pfam Pectate lyase 138 313 IPR002022 -
Mibi12g1924 396 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Mibi12g1924 396 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Mibi12g1924 396 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Mibi12g1924 396 PRINTS Pollen allergen Amb family signature 93 118 IPR018082 -
Mibi12g1924 396 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Mibi12g1924 396 PRINTS Pollen allergen Amb family signature 194 215 IPR018082 -
Mibi12g1924 396 PRINTS Pollen allergen Amb family signature 367 390 IPR018082 -
Mibi12g1924 396 Gene3D - 45 389 IPR012334 -
Mibi12g1924 396 PANTHER PECTATE LYASE 18-RELATED 43 393 IPR045032 GO:0030570
Mibi12g1924 396 SUPERFAMILY Pectin lyase-like 67 391 IPR011050 -
Mibi12g1924 396 SMART amb_all 122 319 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1924 Mibi-ChrMibi12 35541112 35542795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1924 76 323 Polysaccharide Lyase AT5G09280 73.387 6.53e-144 409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1924 12 35541112 35542795 Mibi12g1924 12 35541112 35542795 ECH