Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1854 ATGGTGGTGGGTGTCGGAAAGTTTCGATCTTTCGACGATCGTGCTTCTCCGGCCGCCGGAAAAACCCCTACTCCGCCGCGTAACGGTAAAAACACGAATGACGACGGCGACGACTTAACCCTTGCCAATTGGTCAAAGTCTCCCAGACGCCTCCCTCCTTCAACCACGGGTTTATCTGATCAGGCACAAAAGCTTGCAAGCTCCTCTAAGGTGGCAACAGACAAGATATTATCAGCAGGGGAGGCCAGGTCGTCTGCTGTATTTCAAGCAGAGGTGATTCAATCAAAGTTAGATCCCAGATTCCCCAACTTTGTGAAGTCACTGGTTAGATCACATGTTGGTGGCGTTTTTTGGTTGGGGCTCCCTGCATTTTTCTGTAAAAGATACTTACCGGATATTGACACTACGATTACTTTGGAAGATGAATCTGGTAAAGAATACCAGTTGAAATACATTGCTTGCAAGACAGGTTTAAGCGCTGGTTGGAGGCAGTTTTCTGCAGTCCACAAATTGCAAGATGGAGATGTTTTGGTCTTCCAATTAGTCGAACCTTCTAAGTTCAAGGATTCTCTGCCAAGTAATAGCCCTAAGAGGAAACAAGAAAAACCTGAATCACCACCTCCAGTTGTCCAAAAGAAAAAGAAGAAAAGTGTGCCCAAGATTTCCCCCAAGGTTAGGCAGTGTGCAGCAGAACAATGTGAATATGAAAGTGATGAAACTGGTTCAGCAGTACTGGATCAGAGCTTTGGAACGGAGCTTGAATTCAAGGATGTAAAATGTTTTGAAAATTTCAGTATCATGATTCATGGAGTTCCAATAGATCCTGAGCTCCCCCACGAGGTTCGAAATAAGTATTACAAACTCTGCCATAGCCAGCAGGCCTTTCTACACGAGAATCTCATTAAGGGCATCAACTCTAACCTCATTATCGGCATTATATCTGAAGTTGTCAAAATTGCTGATGCCTTGAGATCCGGCTCACTACTTATCTCAACCGCTGAATTTGCTAAATGGGATAAAGAGTTGCTTGCATTTGAGTATTTGGGCATGAATATGGAATTCTTAAGACACAGATTATGCAGGCTTTTAAACTTGGCATGTGAAACACAAGATGCCTCCGAGACTTCGAGGTATTCAACGTCTGCAACTGAATTCAGTCAAGCAGATAACGGAATAACGAATATTGAAATAAAGCTTGAAGAATTGAAAGAAGCTTGTGATGGTTTTGGTGCTTATCTCCATACATTGAAGTACAAAGCTGAGCGCTTCCATCACTAG 1278 0.4335 MVVGVGKFRSFDDRASPAAGKTPTPPRNGKNTNDDGDDLTLANWSKSPRRLPPSTTGLSDQAQKLASSSKVATDKILSAGEARSSAVFQAEVIQSKLDPRFPNFVKSLVRSHVGGVFWLGLPAFFCKRYLPDIDTTITLEDESGKEYQLKYIACKTGLSAGWRQFSAVHKLQDGDVLVFQLVEPSKFKDSLPSNSPKRKQEKPESPPPVVQKKKKKSVPKISPKVRQCAAEQCEYESDETGSAVLDQSFGTELEFKDVKCFENFSIMIHGVPIDPELPHEVRNKYYKLCHSQQAFLHENLIKGINSNLIIGIISEVVKIADALRSGSLLISTAEFAKWDKELLAFEYLGMNMEFLRHRLCRLLNLACETQDASETSRYSTSATEFSQADNGITNIEIKLEELKEACDGFGAYLHTLKYKAERFHH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1854 425 ProSiteProfiles B3 DNA-binding domain profile. 104 195 IPR003340 GO:0003677
Mibi12g1854 425 CDD B3_DNA 102 188 IPR003340 GO:0003677
Mibi12g1854 425 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 80 188 IPR044837 -
Mibi12g1854 425 MobiDBLite consensus disorder prediction 1 62 - -
Mibi12g1854 425 MobiDBLite consensus disorder prediction 187 222 - -
Mibi12g1854 425 Pfam B3 DNA binding domain 104 187 IPR003340 GO:0003677
Mibi12g1854 425 MobiDBLite consensus disorder prediction 25 40 - -
Mibi12g1854 425 Gene3D - 81 190 IPR015300 -
Mibi12g1854 425 MobiDBLite consensus disorder prediction 47 62 - -
Mibi12g1854 425 MobiDBLite consensus disorder prediction 192 211 - -
Mibi12g1854 425 SMART B3_2 104 195 IPR003340 GO:0003677
Mibi12g1854 425 SUPERFAMILY DNA-binding pseudobarrel domain 97 187 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1854 Mibi-ChrMibi12 34891313 34894218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1854 74 188 B3 DNA Binding Superfamily AT3G19184 46.087 3.84e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi12g1854 B3 6.3e-15 CL0405