Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1849 ATGTGTTCGCAGAGATCGGTGCCGGCGCCGTTTCTGACGAAGACGTACCAGTTGGTGGATGATCCTGCCACTGATGACGTCATATCGTGGGGTGACAGTGGTAACACCTTTGTGGTGTGGAAACATGCGGATTTTGCTAAGGATTTGCTTCCCAACTATTTCAAGCACAACAATTTCTCCAGCTTCGTCCGTCAGCTCAACACCTATGGATTCAGGAAGATCGTTCCTGACAAATGGGAATTCGCAAACGAAAATTTCAAACGAGGACAAAAGGAGCTGATGGCGGAGATCAAGCGTCGGAAACCGGCGGCGGCGTCGAACTCCGGCGGCGACGACGTGGGATCGACCTCGACATCGTCCCCAGATTCAAAGAATCTAGGAACAGTCGAAACGACGAGTTCACAAGTGGCGAATTTATCGGGGGAGAACGAGAAATTGAAGAAGGACAACGAGATATTGAGCAGTGAGCTTGCACAAGCGAAGAAGCAGTGTGAGGAACTGATCAATTATCTGAAGGACCACGTGAAGATGGGGCCCGATCAGATCCAACGGATCATGCGGCAAGGAAGTTGTGGGTCCAGCTGCAAGATGGACGGCCAAGATGACGACGAAATGTCTGCAGGCGAAGGTGAAAGCTTGAAACTTTTTGGGGTAAGGTTGAACATAAGCCATGGAACCTCCTCCACCACTAAGAGAGGGCGAGAAGATCAAATCGGCTGTGGTGGTCCTCACTCTAAGAAGCAGCTTAAAACCGTTGATTTTGTTTCACCTGCGATGATCAAGAGCAGTAAGGTCTGCAACTGA 804 0.5012 MCSQRSVPAPFLTKTYQLVDDPATDDVISWGDSGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELMAEIKRRKPAAASNSGGDDVGSTSTSSPDSKNLGTVETTSSQVANLSGENEKLKKDNEILSSELAQAKKQCEELINYLKDHVKMGPDQIQRIMRQGSCGSSCKMDGQDDDEMSAGEGESLKLFGVRLNISHGTSSTTKRGREDQIGCGGPHSKKQLKTVDFVSPAMIKSSKVCN 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1849 267 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1849 267 Coils Coil 129 170 - -
Mibi12g1849 267 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1849 267 MobiDBLite consensus disorder prediction 109 141 - -
Mibi12g1849 267 Gene3D - 3 101 IPR036388 -
Mibi12g1849 267 SUPERFAMILY "Winged helix" DNA-binding domain 8 100 IPR036390 -
Mibi12g1849 267 FunFam Heat stress transcription factor B-4 3 101 - -
Mibi12g1849 267 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 202 IPR027725 -
Mibi12g1849 267 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1849 267 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1849 267 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1849 267 MobiDBLite consensus disorder prediction 224 244 - -
Mibi12g1849 267 Gene3D - 130 178 - -
Mibi12g1849 267 MobiDBLite consensus disorder prediction 99 143 - -
Mibi12g1849 267 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1849 Mibi-ChrMibi12 34864325 34866006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1849 2 267 HSF AT4G36990 51.042 1.38e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mibi12g1849 HSF_DNA-bind 7.6e-33 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1849 12 34864325 34866006 Mibi10g0150 10 2599629 2602118 CCT
Mibi12g1849 12 34864325 34866006 Mibi12g1849 12 34864325 34866006 ECH