Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1835 ATGGCGGACGGCGATGAACAGCCTTCAACAACTTCCAAGCGAAGGGGAAGAGGACCTGAGGCATCGGCCCGTTCCGAAGCCCTGGAACGCCTCAAAGCTCGAATGAGTGGCGGCCGCCGTTCAGACGCCGATCGCTACCAAATTAAGCTTGATAACCCTATTTACGATACCGTCGCCGAGGACGAGTACAATGCTCTCGTCGCCAAGCGTCGCGAAGAAGCCAGAGGTTTTATTGTCGATGATGATGGTCTTGGCTACGGGGACGAAGGGGAGGAGGAGGATTGGTCTAAAGCTGGGTTTACGCTGTCATCTGATGAATCTGATGGTGAAACTGAGAAGCCGAAAAGGAAGAGGCAAGAGAAGAAAGATCCTCAACCTAAGAGACCTTCGTCTTCGTTATCGGCTGCTGCGGCGATGATTGGACCGCAGAGGTTGTCGTCGATGTTCACTTCGTCGGTTTTTAAGAAAAATAGGGATGAGAAGGGCAAAGGATTTTCTAGTGATAGCATTGTTGATGATGTTATCGCAGAGTTTGCTCCGGATGAGACTGATAGACTAAAGCGCAGACGCGGGCCAATAAATCCTTCTTCAAATGCGAACAATGCTCTGCCGATCTGTAATGTTAAGAGCGAGGAACCAGCAATTGGATGTCCTGATCCGATGGGAAATGGCGATTATGAATCTGCCAGAGTTGTGGAAAATGATGGTTATGCCGTGGGTTCTGAACTAAACAACGGAGGGGTCAAAGTGGAGGCAACTGTTGAAGAATCAGAAGATGGGAGGAATGTTAATTCTGACGATGGTCTGGCATCACTGTTGCAAACCCATAGTGGTCCAACTAATGGAGACGTGACTGAAGAGAAAATGTTGAAGGATGCTGAGATAGAAGCTGAAAAAACAGTGGAGAAGGAGGCATTTACTCTGAATGCGAAAATTAAAGAAGAAGACCCTGCACTGAATGCTACTATCGGTTGGCAGGCAGCAAAGAGCGAGGGGCATGCCAATGTTGCTGATTCAAAGGTGGCCGGCGAAGCTTTAAATAGTGAGGGAAAATTAGAGTTGGTCAAGGACTCGCTGCCTTTCTACATACTTGATGCCCATGAGGAATTCTATGGAGCTAACAGGGGTACCCTGTATTTGTTTGGGAAGGTCAAAACAGGTAATTCGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCGTCCTTTACATCACACCGATGAGATGATGGAACTTGAGAAGGATGTTGAAGAGTCCCAGATTTCTCGTACAGACTTTTATAGAAAGCTGCAAGGTATGGTGTCTGGTTTAAAACATGAGATAGCAAAACAGCTGTTAGATCTGAAAGTTTCAACCTTTAGCATGAAGCCTGTTAAGAGGAAGTATGCATTTGAACGTTCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATCAACTATCCATTCAAGGATCCACCTCTTCCAGTAGATATGAAAGGAGAGAGTTTCTGTGCTGTCCTAGGGACTCATTGCAGTGCGTTGGAGCTTTTCCTAATTAAAAGAAAGATCAAGGGGCCTTCATGGTTGCAAGTCTCAAATTTTTTTTCCCGCCCTGCTTCTGAAAGGGTTAGCTGGTGCAAATTTGAAGTGGTTGTTGACTCTGCTAAAGACATATTGATTTCAACTTCCTCCCAATCCAGTTTTGAGATTCCTCCCGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAACAAAACTTAAATGAGATTGTCTCTGCATCCATTGTTTGCTGCCGCAGGGTCAAGATTGACACTCCCATGATGGCTTCAGAATGGAAGAGACCTGGACTACTGACCCATTTTACTGTTGTCCGTAAGCTTGATGGAGGAATATTTCCAATGGGATTCAATAAGGAAGTTACAGACCGAAATACAAAAGCTGGCTCAAATGTTCTTTGTGTTGAGAGCAGTGAAAGGGCTTTACTAAACCGCCTGATGATAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGGCATAACATTTCTGGATTTGACCTAGATGTTTTTCTTCACAGATGTCAGGCTTCTAAAGTGACATCCCCCATGTGGTCCAAAATAGGCCGCCTTAATCGATCTGAAATGCCTAAACTTACCAGAGTAAGCACTGTTTTTGGTTCTGGAGCTACTCCTGGCATCTTGTCTTGCATTGCTGGTCGGCTCCTTTGTGACACATACTTGTGTGCTCGTGACCTATTAAAGGAGGTTAGCTACTCTTTATCTCAACTATCAAAAACTCAACTGAATAAAGTTCGAAAGGAAGTTGCTCCACATGATGTTCCAAAAATGTTCCAATCGGCAGAATCCCTCATGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTATCTATGGAACTCATGTTTCATTTGAGTGTTCTTCCCCTCACACGTCAGCTGACTAATATTAGTGGTAATTTGTGGGGAAAAACACTTCAGGGTGCAAGGGCACAGAGAGTGGAGTACCTTCTGTTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGATTCCTCCCCATGCCAAAGTAACAAAATTGACTAAACGTAGGGGAACTCATGGTGTTGAGGATGTCAGCTTTGACGAAGTTATTGACAATACAAACTATGACAATGATGCTCCTGACAGTGATCATGGTAAAAGCAAGAAGACTCCGTCCTATGCTGGAGGACTAGTTTTGGAGCCTAAAAGGGGTTTATATGACAAATATATATTGCTCTTGGACTTCAATAGTCTTTATCCTTCCATAATTCAGGAATACAATATTTGCTTCACAACTGTTGAAAGATCTACAGACGGATCTTTTGCTCGTTTGCCATCTAGTAAAACAACTGGAGTTTTGCCAGAGTTGCTGAAAAATTTGGTTCAAAGGAGGAGAATGGTTAAGTCATGGATGAAAAACGCTTCTGGTCTTAAAGTTCAGCAACTGGACATTCAGCAACAAGCACTCAAGCTTACTGCAAATAGTATGTATGGATGCCTCGGATTTGCTAATTCAAGATTTTATGCAAAACCGTTGGCTGAGCTTATAACCTTGCAAGGAAGGGAGATATTACAAAGTACTGTTGATCTTGTTCAGAATAATTTGAACTTAGAGGTGATCTATGGAGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAAGCAAAAGCAATGGCCGGAAAAGTGATTCAAGAGGTTAACAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGAATGCTCCTGCTTAAGAAAAAAAAATATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCACGCTATATGAGGTTATCGAACGTAAAGGTCTGGACATTGTTCGTCGTGATTGGAGTCTATTATCTAAAGAAATAGGAGATTTTTGCCTTGGTCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTTGAATCAATTCACAGCTCTCTTCGTAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTGCCGTTAGAGAAATATATCATCACTAAGACATTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAAATCAACCGCATGTGGCACAGAGGTTGAAGCAAAAGGGCTACTCTACTGGCTGCTCTGTTGGTGATGCAATTCCCTACATTATTTGCTATGAGCAGGGCAGTAGTTCAAGCAGCGGAATAAGTATTGCTCAACGTGCTAGACATCCTGAGGAACTAAAACAAGAACAAGGGAAATGGATGATTGACATTGATTATTACCTGTCACAACAGCTTCATCCTGTTGTATCACGTCTCTGTGCATCAATTCAGGGCACGAGTCCAGAGAGGCTGGCTGATTGTTTAGGGCTTGATGTATCAAAATTTCAACACAAGTCAAGTGAAGCCTACAATGGTGATCTTTCAAATTCACTCATGTTTGCTGCTGATGACAAAGAGAGGTATCAAGGATGCGAGCCGTTGGTTTTGTCATGTCCTAGCTGCTCTGGTACTTTTGACTGTCCTTCCATCTTTAAATCTATTTGTGAAAGTGAAAATCCAACAAGCTTGGGCACGGAGGAATCAAGCTATAACTTCTGGCGTAAGCTGCGCTGTCCTAAGTGCCCGGAAGAAGATGGTGTTGGCAGAATTTCTCCTGCAATGATTGCCAATCAGGTCAAAAGGCAAGCAGATAAGTTTATTTCAGTGTACTACAGAGGCTTGTTAATGTGTGACGATGAAACTTGTAAGTATTCTACACGAAGTATCAACCTTCGCCTGGTTGGTGACTCTGAAAGAGGAACTGTTTGTCCAAATTACCCTCGCTGCAATGGGCGTCTTCTAAGACAGGCAGACTTGTACAAACAGCTCTCGTATTTTTGCCATGTCTTGGATACCGTTTCCTGTATAGAAAAGATGGAGGTTAAATCTAGGATACCGATTGAGAAAGAAATGTCGAAAATTAGGCCAATGATTGATCTGGCAGCATCAACGATACATAAAATTCGGGATCGGTGTGCCTTTGGGTGGGTACAGATGCAGGACTTGGTCGTCACTGTATGA 4614 0.4304 MADGDEQPSTTSKRRGRGPEASARSEALERLKARMSGGRRSDADRYQIKLDNPIYDTVAEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGETEKPKRKRQEKKDPQPKRPSSSLSAAAAMIGPQRLSSMFTSSVFKKNRDEKGKGFSSDSIVDDVIAEFAPDETDRLKRRRGPINPSSNANNALPICNVKSEEPAIGCPDPMGNGDYESARVVENDGYAVGSELNNGGVKVEATVEESEDGRNVNSDDGLASLLQTHSGPTNGDVTEEKMLKDAEIEAEKTVEKEAFTLNAKIKEEDPALNATIGWQAAKSEGHANVADSKVAGEALNSEGKLELVKDSLPFYILDAHEEFYGANRGTLYLFGKVKTGNSYQSCCVVVKNMQRCVYAIPSRPLHHTDEMMELEKDVEESQISRTDFYRKLQGMVSGLKHEIAKQLLDLKVSTFSMKPVKRKYAFERSEIPAGENYVLKINYPFKDPPLPVDMKGESFCAVLGTHCSALELFLIKRKIKGPSWLQVSNFFSRPASERVSWCKFEVVVDSAKDILISTSSQSSFEIPPVVVTAINLKTIINEKQNLNEIVSASIVCCRRVKIDTPMMASEWKRPGLLTHFTVVRKLDGGIFPMGFNKEVTDRNTKAGSNVLCVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVFLHRCQASKVTSPMWSKIGRLNRSEMPKLTRVSTVFGSGATPGILSCIAGRLLCDTYLCARDLLKEVSYSLSQLSKTQLNKVRKEVAPHDVPKMFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPPHAKVTKLTKRRGTHGVEDVSFDEVIDNTNYDNDAPDSDHGKSKKTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFARLPSSKTTGVLPELLKNLVQRRRMVKSWMKNASGLKVQQLDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTLYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLRKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVAQRLKQKGYSTGCSVGDAIPYIICYEQGSSSSSGISIAQRARHPEELKQEQGKWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDVSKFQHKSSEAYNGDLSNSLMFAADDKERYQGCEPLVLSCPSCSGTFDCPSIFKSICESENPTSLGTEESSYNFWRKLRCPKCPEEDGVGRISPAMIANQVKRQADKFISVYYRGLLMCDDETCKYSTRSINLRLVGDSERGTVCPNYPRCNGRLLRQADLYKQLSYFCHVLDTVSCIEKMEVKSRIPIEKEMSKIRPMIDLAASTIHKIRDRCAFGWVQMQDLVVTV 1537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1835 1537 FunFam DNA polymerase 973 1022 - -
Mibi12g1835 1537 CDD POLBc_alpha 908 1309 IPR045846 GO:0003887|GO:1902975
Mibi12g1835 1537 Gene3D DNA Polymerase alpha, zinc finger 1332 1522 IPR038256 -
Mibi12g1835 1537 TIGRFAM pol2: DNA polymerase (pol2) 54 1291 - -
Mibi12g1835 1537 Gene3D - 574 885 IPR036397 GO:0003676
Mibi12g1835 1537 Pfam DNA Polymerase alpha zinc finger 1333 1533 IPR015088 GO:0003887|GO:0006260
Mibi12g1835 1537 FunFam DNA polymerase 574 888 - -
Mibi12g1835 1537 MobiDBLite consensus disorder prediction 70 143 - -
Mibi12g1835 1537 ProSitePatterns DNA polymerase family B signature. 1063 1071 IPR017964 GO:0000166|GO:0003676
Mibi12g1835 1537 SUPERFAMILY Ribonuclease H-like 357 862 IPR012337 -
Mibi12g1835 1537 Pfam DNA polymerase family B 833 1293 IPR006134 GO:0000166|GO:0003677
Mibi12g1835 1537 Gene3D - 1139 1322 IPR042087 -
Mibi12g1835 1537 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 20 1536 - -
Mibi12g1835 1537 MobiDBLite consensus disorder prediction 106 127 - -
Mibi12g1835 1537 SMART polmehr3 574 1075 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi12g1835 1537 SUPERFAMILY DNA/RNA polymerases 858 1308 IPR043502 -
Mibi12g1835 1537 FunFam DNA polymerase 1332 1523 - -
Mibi12g1835 1537 Gene3D Helix hairpin bin 971 1022 - -
Mibi12g1835 1537 Pfam DNA polymerase alpha subunit p180 N terminal 28 95 IPR024647 -
Mibi12g1835 1537 Coils Coil 1089 1109 - -
Mibi12g1835 1537 MobiDBLite consensus disorder prediction 8 26 - -
Mibi12g1835 1537 FunFam DNA polymerase 1139 1323 - -
Mibi12g1835 1537 Gene3D - 361 560 - -
Mibi12g1835 1537 FunFam DNA polymerase 401 527 - -
Mibi12g1835 1537 CDD DNA_polB_alpha_exo 574 825 - -
Mibi12g1835 1537 Gene3D Palm domain of DNA polymerase 901 1126 IPR023211 -
Mibi12g1835 1537 PRINTS DNA-directed DNA-polymerase family B signature 1008 1020 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi12g1835 1537 PRINTS DNA-directed DNA-polymerase family B signature 1061 1069 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi12g1835 1537 PRINTS DNA-directed DNA-polymerase family B signature 932 945 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi12g1835 1537 MobiDBLite consensus disorder prediction 1 26 - -
Mibi12g1835 1537 Pfam DNA polymerase family B, exonuclease domain 390 768 IPR006133 -
Mibi12g1835 1537 Gene3D - 401 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1835 Mibi-ChrMibi12 34707133 34719459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1835 9 1535 Core DNA Replication Machinery Family AT5G67100 60.437 0.0 1824
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1835 12 34707133 34719459 Mibi12g1835 12 34707133 34719459 ECH