Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1834 ATGGGGGATATGTATAGCTATAATAACAACACTGATAACCATAATTTCCTTCCTTCTTCGACCTCATCTCTTTCCTCATCTTCACCCCAAGATGAAATCTCGCTTTTACTGCGTCAGATTCTCCTCCGTTCATCCTCCTCCTTCTCCTCAGCATCGGCTAAAAACACCACCTCTGACGGATCATCACTTTCCCAACATGGGATCTCCGTGGTTGATTCCTCTGTTGGTGTTAGAGCTCCAAACGATGCTTTTCTTTCCTCGCTGGGGACTTGTACGTTGGCCGAAATGAAGGGTGGTTCTGTTGTAAACATGCCTTTCTCATCTTTCGGAGTGAGTGAGAATGAGTTCGATGAGTATGATTGCGAGAGTGAGGTAATGTTTCTGGTCTTAAAGTTTCAAGCTTTTGTTTCAATGTCCTTCTTTCTCTCTGGGTTTTCCGCATGCTGGTTGCTGAGATTAAAGAAAACTGCAGGTGCATTGGTGGATCAGCAGCCTATAAAGTCAGTTCCACCGAGGAGTTCATCCAAGAGAAGCAGAGCTGCAGAAGTTCATAATTTGTCTGAAAAAAGAAGGAGAAGCAGGATCAACGAAAAAATGAAGGCATTGCAAAATCTAATTCCAAATTCAAACAAGACAGACAAGGCTTCGATGCTGGATGAAGCCATTGAATACCTGAAACAGCTCCAGCTCCAAGTACAGATGCTGTCAATGAGAAACGGTTTGAGTTTGCATCCTATGTGCTTTTCTGAAGACTTACAACCTCAGCAATTTTGTCAGATGGGATCTGAGCTCAATGAAGAAATCAGGTCTTTGCCTTCAAACATGACAACTACTCTGCCTTTGACCCAAGAAAACCCCTTGCAATATGATTCCAAATCCAGTCTACCTGATAAACTCAACACACAGGACCAGCCATTAATGCCCTCTCCATCATATACAATCAACCCAGAAACTTCTTTTGGTCTAGAATCCCCAAATCTGCCGCATATAAGATCCTTTTCACAGAAAAGAACTTCTGAGATGCGTAGCAATGAGATATTGTGGCATCAGCAATTAAATGCCAGGCTTTTAGATAGCAACCCTTTAGGTGGTTCTCAAGTACCACACACATTTGATATGCAAACGCCAGCGCTGAAGGACAAGGGATTTGAAACAGGCATCACAGGAAAAGATCAACAGGCATCAATACTAATAAATAGCGTAAACTACGTTAATATCACGTCCCAGTTTCGTATGTAA 1239 0.4253 MGDMYSYNNNTDNHNFLPSSTSSLSSSSPQDEISLLLRQILLRSSSSFSSASAKNTTSDGSSLSQHGISVVDSSVGVRAPNDAFLSSLGTCTLAEMKGGSVVNMPFSSFGVSENEFDEYDCESEVMFLVLKFQAFVSMSFFLSGFSACWLLRLKKTAGALVDQQPIKSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFSEDLQPQQFCQMGSELNEEIRSLPSNMTTTLPLTQENPLQYDSKSSLPDKLNTQDQPLMPSPSYTINPETSFGLESPNLPHIRSFSQKRTSEMRSNEILWHQQLNARLLDSNPLGGSQVPHTFDMQTPALKDKGFETGITGKDQQASILINSVNYVNITSQFRM 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1834 412 CDD bHLH_AtPIF_like 179 241 - -
Mibi12g1834 412 Pfam Helix-loop-helix DNA-binding domain 183 229 IPR011598 GO:0046983
Mibi12g1834 412 Gene3D - 174 238 IPR036638 GO:0046983
Mibi12g1834 412 FunFam Basic helix-loop-helix transcription factor 174 237 - -
Mibi12g1834 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Mibi12g1834 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 239 IPR036638 GO:0046983
Mibi12g1834 412 MobiDBLite consensus disorder prediction 276 309 - -
Mibi12g1834 412 MobiDBLite consensus disorder prediction 166 190 - -
Mibi12g1834 412 SMART finulus 185 234 IPR011598 GO:0046983
Mibi12g1834 412 Coils Coil 218 238 - -
Mibi12g1834 412 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 25 344 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1834 Mibi-ChrMibi12 34692017 34694232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1834 7 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 37.923 5.58e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi12g1834 HLH 4.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1834 12 34692017 34694232 Mibi12g1834 12 34692017 34694232 ECH