Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1833 ATGTTGAACTATCAAGGTTTAGGTCAATACAATTCCATCCAAAGTGAGACCAACCATTCGGTTATCCGTCATAACAGAGACTTAAATGTACCATATGTGGAAAACGACTCTTACACCAATCAGAACATGATTGAACCTGTTGCACCAGACAATCATTGTGGACAAGGAATCGGTAACAACATGATGAACATGAGTTATTTGTCCTCTAATAGATCTCCTGAACATGCTTCTAGAGAATTTTTGACAGGAGAAAGTTTAAGATCGGTTGTGCAAGCTAGGGCGCCCACATCGCAAGCTGCTAATGTCCAAGCCTCTAACAGCTTAAACATAGTACCTCCTTCTAACGGTGCTGCAAACATCCACCCACAACATGATATGAGACCCATAAGTCATGTTCCTCCATTCCCACCTATTTATAATGTGTCTCCAGGAGGCGTAAACCTTGACAACATTTTTAGAAATATAATGTTTGTTCCCCAAACTGGAGCTCAGTCACCTTATCTAGCAACCTTGAATTTCGACCATGGAACTGCAAACTTTCTTGGAAATTTTGCCCCTCCCTCCCATTATGGTCCTTTTCTAAATGCTCCTATAGGTTTCCCTTGGTTCAATGCTTTTGGTGAATATCATATGCCAACGTTTTTTGGAGTTATGAACCACCCTGCAGTTGCCCCTATTGGTTTCCCATGGCCAAGTAGTTTTAACCAATTAGATTTATTTAATATTGCTTGGTTTCAGAACCAGGTCAGAATGCCACAAATATCTGAGGATCTATCTTTTCTTGGTGTTGCTGGACCTACTTTCACTGATGAAGCTAGAAACCATATGTTAAATGAGCCCGTTCCTGGATTGAGTGAAGAAGATATTATGGCATACCTTAGGCTCGAAGAGTTCCAATTGCCCACAGATTTACCTCGCCAAGACGTTGATTGCTGTTGCATATGTCAGGACGACTATGCTGATGGGGATGACATTGGGGTGCTGGATTGCGGACACAAGTTTCATTATGATTGTATCAAAAAATGGCTGGGCTTCAAGAACACCTGCCCCATGTGCGTTAGGATTGGACTAGCTGTGTGA 1080 0.4194 MLNYQGLGQYNSIQSETNHSVIRHNRDLNVPYVENDSYTNQNMIEPVAPDNHCGQGIGNNMMNMSYLSSNRSPEHASREFLTGESLRSVVQARAPTSQAANVQASNSLNIVPPSNGAANIHPQHDMRPISHVPPFPPIYNVSPGGVNLDNIFRNIMFVPQTGAQSPYLATLNFDHGTANFLGNFAPPSHYGPFLNAPIGFPWFNAFGEYHMPTFFGVMNHPAVAPIGFPWPSSFNQLDLFNIAWFQNQVRMPQISEDLSFLGVAGPTFTDEARNHMLNEPVPGLSEEDIMAYLRLEEFQLPTDLPRQDVDCCCICQDDYADGDDIGVLDCGHKFHYDCIKKWLGFKNTCPMCVRIGLAV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1833 359 Pfam Ring finger domain 311 352 IPR001841 -
Mibi12g1833 359 SMART ring_2 312 352 IPR001841 -
Mibi12g1833 359 CDD RING-H2_TTC3 312 352 - -
Mibi12g1833 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 355 IPR013083 -
Mibi12g1833 359 ProSiteProfiles Zinc finger RING-type profile. 312 352 IPR001841 -
Mibi12g1833 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 41 352 IPR045191 GO:0061630
Mibi12g1833 359 SUPERFAMILY RING/U-box 311 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1833 Mibi-ChrMibi12 34684773 34688202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1833 283 359 C3H Transcription Factor Family AT2G15530 42.500 2.25e-18 84.7