Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1830 ATGGGGGTTTGCGTGGACTTGTTCGATTTCATCAAGCAGATCTTTTTGCGGATATGTCAGTTCTTTATTCTTCTTGGAAGGTCCGACGTATCTGGTTGGGGAGCTTTTTTAAAGTTTGCCAATCATTCTCCTGATCCGAATTGTCATGCCAAGGTTATTATGGTTTCTGGAGATCACAGAGTAGGGATTTTCGCCAAGGAAAGGATCAGTGCTGGGGAGGAACTTTTCTATGATTATGGTTTTGAGCCAGATATAACTCCATCTTGGGCGCGCAAGCCCGAGGCATGTGGGTCCAGAAAATATGACGGCGCTCCTTCAAGTGGTCGGGCGAAAAAGCTTACTTAA 345 0.4551 MGVCVDLFDFIKQIFLRICQFFILLGRSDVSGWGAFLKFANHSPDPNCHAKVIMVSGDHRVGIFAKERISAGEELFYDYGFEPDITPSWARKPEACGSRKYDGAPSSGRAKKLT 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1830 114 SMART set_7 3 86 IPR001214 GO:0005515
Mibi12g1830 114 Pfam SET domain 17 80 IPR001214 GO:0005515
Mibi12g1830 114 Gene3D SET domain 13 112 IPR046341 -
Mibi12g1830 114 SUPERFAMILY SET domain 30 99 IPR046341 -
Mibi12g1830 114 MobiDBLite consensus disorder prediction 94 114 - -
Mibi12g1830 114 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 37 113 IPR045318 GO:0006338|GO:0018024
Mibi12g1830 114 ProSiteProfiles SET domain profile. 1 80 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1830 Mibi-ChrMibi12 34655114 34655977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1830 29 84 EF-hand Containing Proteins AT5G13960 38.333 1.51e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mibi12g1830 SET 3.7e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1830 12 34655114 34655977 Mibi12g1830 12 34655114 34655977 ECH