Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1819 ATGTGGGATCTGAATGACTCGCCCGATTGGAGGAAGGGTGATGAGGAATCCGAAGGCTGCTCTTCCCTCAAGACATCCTTCGACGACGGGGATGACGACAAGGGCAAACGTGTCGGATCTATGTCAAATTCAAGCTCATCTGCCGTAGTAATCGAGGACGGATCGGAGGAAGAAGAAGGCGAGAGGACCAAACCATCATTCAAGAAGAAAAGCACTAGTAAGATATTCGGCTTCTGTGTCAACCCGGACGACTCCATGGATGTTGATGACTCCCCGGTGACTCGGCAGTTTTTTCCGGTGGAGGAGGAGGCGGCGGGTGGGGCCAGCACGGCCTTCCCTAGGGCCCACTGGGTCGGTGTGAGATTCTGTCAGCCGGAGGCGGCCGGCGCCGCCGTTGTCGCCGCCGGAGGGAAATCGGTGGAAGTGTCGTCGCAGCCGATGAAGAAAAGCCGGCGAGGGCCGAGGTCAAGAAGCTCTCAGTATAGGGGAGTCACTTTTTACAGAAGAACAGGTCGTTGGGAGTCACATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACGGCACATGCGGCTGCTCGTGCGTATGATAGAGCGGCCATTAAGTTCCGGGGAGCTGAGGCCGACATCAACTTCAACATTGAAGATTACGAAGAAGACTTGAAGCAGATGAGCAATTTGACGAAGGAAGAGTTTGTGCACGTACTTCGTCGACAAAGCACTGGATTCCCCAGAGGAAGCTCCAAATATAGAGGTGTGACTTTGCACAAGTGTGGAAGATGGGAGGCTAGGATGGGTCAATTTCTTGGCAAAAAGTACGTTTATCTTGGTTTGTTTGACACGGAGATTGAAGCTGCAAGGGCTTATGACAAAGCAGCCATAAAATGTAATGGCAAAGAGGCCGTCACTAACTTCGATCCCAGCATCTATGAGAATGAGCTTAATTCTGAATCCTCGGGTAATGCTGCGGATCACAATCTGGATTTAAGCCTGGGCAATTCGAGCTCAAAGCAAGGTAATGGTCAAGCACCGGGAAGTGAAGCATCGGAATCAATTTGGAGGAACAATGGAGGACTAATGAGGCCTAAGTTGACAATGCTTGATAATGGTCAAACTCAGCTTCAATCTGCAGCATCTAGAGAAATGCAAAGATTTGGCGGCTACAGGACAACTAGAGAGCCTCAAATGCTCACCAGTTTTGCTCCATCACATCTTCAACCACCAAACTTTCATTATCCCAGCAGCAGTAACGAAGGGCGTATAGGTAGCGATCTTTCGCTATCAATGAACGAACATCATCGTTCATTGGGGCCAGATCCTCCTCCTCCTCCTCCTCTTCCTCTTCATCAGGCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCAACGCAGATTAACAGACTTTCACAAGGGTGGCTGCAGAAAAATGGGTTCCACACACTCATGAGACCCAACTGA 1473 0.4997 MWDLNDSPDWRKGDEESEGCSSLKTSFDDGDDDKGKRVGSMSNSSSSAVVIEDGSEEEEGERTKPSFKKKSTSKIFGFCVNPDDSMDVDDSPVTRQFFPVEEEAAGGASTAFPRAHWVGVRFCQPEAAGAAVVAAGGKSVEVSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGNAADHNLDLSLGNSSSKQGNGQAPGSEASESIWRNNGGLMRPKLTMLDNGQTQLQSAASREMQRFGGYRTTREPQMLTSFAPSHLQPPNFHYPSSSNEGRIGSDLSLSMNEHHRSLGPDPPPPPPLPLHQAHYLATAAASSGFPTQINRLSQGWLQKNGFHTLMRPN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1819 490 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 MobiDBLite consensus disorder prediction 316 356 - -
Mibi12g1819 490 MobiDBLite consensus disorder prediction 1 67 - -
Mibi12g1819 490 CDD AP2 160 217 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
Mibi12g1819 490 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 MobiDBLite consensus disorder prediction 403 427 - -
Mibi12g1819 490 FunFam AP2-like ethylene-responsive transcription factor 251 311 - -
Mibi12g1819 490 CDD AP2 251 311 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 90 382 - -
Mibi12g1819 490 SMART rav1_2 252 315 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 MobiDBLite consensus disorder prediction 139 161 - -
Mibi12g1819 490 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700|GO:0006355
Mibi12g1819 490 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700|GO:0006355
Mibi12g1819 490 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 Pfam AP2 domain 251 300 IPR001471 GO:0003700|GO:0006355
Mibi12g1819 490 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Mibi12g1819 490 MobiDBLite consensus disorder prediction 1 38 - -
Mibi12g1819 490 SUPERFAMILY DNA-binding domain 251 311 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1819 Mibi-ChrMibi12 34421604 34424202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1819 1 489 AP2-EREBP Transcription Factor Family AT4G36920 55.906 1.35e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mibi12g1819 AP2 3.3e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1819 12 34421604 34424202 Mibi10g0168 10 2904110 2907156 CCT
Mibi12g1819 12 34421604 34424202 Mibi12g1819 12 34421604 34424202 ECH