Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1814 ATGTTAAAGTCAACCAATGATGCTTCACTCTCGCAGAGGCTTGGAGGGATCCTCCAATCAATCAATCAATCAATCCCCATGGACGACATGGCTGCCTTCTACTCACAATCCCAACCTTCGACTCATCACACTTACCCATATTATCAGCATCCTCATCCGCCGTCTCTTGCGGTGGTCCCACCTCCTCCCGGCGCGGCGGCTCCTCCCGCCCCTCAATATGGGTCCTACCACCAACCCATCTTTTCATCTTACGCCCCTCCTAATCCTCCTCTTCCCTTTTCCCCCGACGAGGTTCGTACTCTCTTCGTTGCCGGCCTTCCCGAGGATGTCAAGCCTCGCGAAATCTACAATTTGTTTCGTGAGTTCCCAGGTTACGAGTCATCCCATCTTCGGAGCCCCACTGACTCGTCGCAGGCTTTTGCTTTTGCTGTATTCACTAATCAGCAGTCTGCACTCATGGCAATGCATGCATTAAATGGGATGGTCTTTGACCTTGAAGAGGGGTCGACTCTGTACATAGATTTAGCCAAATCCAACTCTAGGTCCAAGCGCACAAGATTAGACGATGAAATAGTTGGCTCAGATAAGAAGGCTAGAGGATCTTTTTCAAGGGCAACTCCTAACTCCGGTGTTGGCAGCATACATATGCCTGGAATGGGTAATCCTGCTTACAACACAAACACGTATGGTTATCCATCTGCACAAAGCCAATGGTTTGTTGATGGTAAAGCTTTTAATGACAGTGCAGCAGCAAATTTGAATAACTCCTCCCGTATTCCACAAAATGTAACCCCATGTCCAACTTTATTTGTGGCTAACCTGGGGCCATCTTGTACCGAAGAAGAGCTAATGCAAGTATTTTCCAGATGTCCTGGATTTTTGAAACTGAAGATGCAGAGCACATATGGATCTCCTGTTGCATTTGTTGATTTTCAGGATGTTGCCAGTTCAACTGGAGCTCTAAACAGTCTACAAGGCACCATTCTTTATTCATCAACAGCTGGCGAGGGAATACGACTAGCATATGCAAAATCACGGATGGGTATGCGGAAGAAGCCAAAGTGA 1065 0.4742 MLKSTNDASLSQRLGGILQSINQSIPMDDMAAFYSQSQPSTHHTYPYYQHPHPPSLAVVPPPPGAAAPPAPQYGSYHQPIFSSYAPPNPPLPFSPDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPTDSSQAFAFAVFTNQQSALMAMHALNGMVFDLEEGSTLYIDLAKSNSRSKRTRLDDEIVGSDKKARGSFSRATPNSGVGSIHMPGMGNPAYNTNTYGYPSAQSQWFVDGKAFNDSAAANLNNSSRIPQNVTPCPTLFVANLGPSCTEEELMQVFSRCPGFLKLKMQSTYGSPVAFVDFQDVASSTGALNSLQGTILYSSTAGEGIRLAYAKSRMGMRKKPK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1814 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 164 IPR000504 GO:0003723
Mibi12g1814 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 332 IPR000504 GO:0003723
Mibi12g1814 354 SUPERFAMILY RNA-binding domain, RBD 95 331 IPR035979 GO:0003676
Mibi12g1814 354 SMART rrm1_1 100 174 IPR000504 GO:0003723
Mibi12g1814 354 SMART rrm1_1 268 337 IPR000504 GO:0003723
Mibi12g1814 354 FunFam RNA-binding protein with multiple splicing 2 96 186 - -
Mibi12g1814 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 178 IPR000504 GO:0003723
Mibi12g1814 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 345 IPR000504 GO:0003723
Mibi12g1814 354 Gene3D - 95 188 IPR012677 -
Mibi12g1814 354 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 250 345 - -
Mibi12g1814 354 CDD RRM_scw1_like 265 344 - -
Mibi12g1814 354 CDD RRM_RBPMS_like 99 174 - -
Mibi12g1814 354 Gene3D - 260 353 IPR012677 -
Mibi12g1814 354 FunFam RNA-binding protein with multiple splicing 259 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1814 Mibi-ChrMibi12 34383385 34389870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1814 76 331 Eukaryotic Initiation Factors Gene Family AT4G34110 21.843 1.10e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1814 12 34383385 34389870 Mibi12g1814 12 34383385 34389870 ECH