Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1796 ATGGAAACGGCCCCAAATTCACTTCCTCCGTCTCAATTTCAGTCAATTGTTTTCTACCATGGAGCCAAGAATATTGGATTCTCCAAATCCTTTCTCCACCTACCTTCCCTTTCTTACTATTCCACTTTAAGTAGCCGCTTTTCTTCTCGCAAATTTCTCAGGCTTCATCGCCGCCCTCTGCTTTGTGTTGCTGAATCCAGCACTAATCACCATCACCATCACCATCACCATCATAGTGTTCGAACCCAGCACGATCATCACGGTCACCACCACAATCACAGCGATCAAAGTCACCATGACCATCACGGCTATCATAACCACCACCACGTACACGTTAACGATTCTGCGAATCTTACCGGAGCTCAAAAAGCTATTCTCGGTTTTGCTAAAGCTACCAGATGGTTAGACTTGGCGGATTTCTTAAGGGAGCACTTGCATTTGTGCTGCTGTTCAACTGCTTTATTTGTGCTTGCTGCCATTTGCCCTCATGCCTTGCCTAAGCCCGTCATTAAGCCTGTTCAAAATGCTCTCATTTTCATTGCTTTTCCTTTAGTTGGGGTTCCTGCATCACTTGACGCTCTTGTCGAAATTGGCAGTGGAAAAGTAAATATCCATGTGTTGATGGCTCTGGCAGCCTTTGCGTCCATATTTATGGGGAATCCTCTGGAGGGAGGATTGCTTCTTGCGATGTTTAATCTGGCTCATATAGCTGAGGAGTACTTCACCAGCCGTTCAATGATTGATGTTAAAGAGTTAAAGGACAACAATCCAGAGTTTGCCCTTGTCCTGGAAACTGACAGGGATGATAAACTTCCTAATACCGTTGACTTGGCGTACCAGAGGGTTCCTGTGCATGATGTAGTAGTGGGCTCATATATCTTGGTTGGAGCTGGAGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGCAGTGCTACAATTACCATTGAGCATCTGACTGGAGAAGTCAAACCTTTGGAGGCTAGAGTTGGAGACAGAGTTCCTGGAGGTGCAAGGAATTTAGATGGGAGAATAATTATGAAGGCAACAAAGACTTGGAAGGAATCGACTCTTAACAGAATTGTACAGTTGACTGAAGAAGCACAGTTGAATAGACCAAAGCTTCAAAGGTGGCTGGATGAATTCGGTGATCAATACAGCAAAGTTGTCGTGGTGTTATCAGTTGCTATTGCTGTAATTGGGCCACTCATATTTAAATGGCCATTTTTTAGCACATCAGCTTGCAGAGGTTCAATTTATAGAGCCCTGGGCCTCATGGTGGCTGCGTCTCCATGTGCCTTGGCTGTAGCTCCATTGGCATATGCTACAGCAATTAGCTCATGTGCAAAAAAGGGGATATTGCTAAAAGGTGGTCATGTTCTGGATGCTCTATCTTCTTGCCATACAATCGCATTTGACAAAACAGGAACACTGACAACTGGTGGACTTGTATTCAAGGCAATAGAACCAATTTATGGTCATAAGGTTATGAATAACATAACAAAAATTCCATCCTGCTGCATTCCTAGCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCTGCCATGGAAAAGGGTACCACTCACCCCATTGGAAGGGCAGTTGTTGACCACAGTGAGGGGAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTTGAGTATTTTCCTGGTAGAGGACTTGTTGCCACTCTCAACAGCATTGAGTTAGAAACTGGAGGAGCTAAACTTTTAAAAGCATCACTTGGATCCGTGGATTTCATCACCTCATTATGCCAATCTGAAGATGAGTCGAAAAGGATCAGGGAAGCAGTTAATGCATCTTTGTATGGAAGTGAATTTGTTCATGCTGCCCTCTCAGTTGACAAAAAGGTAACACTGATTCACTTAGAGGATAGACCTCGGCCTGGGGTTTCTAATGTCATACAAGAATTGCAAGATGAAGCAAACTTCCGCGTAATGATGTTAACTGGTGACCACGAGTCCAGTGCAAGGAGAGTTGCAAGTGCTGTGGGCATCAATGAGGTTTATTGCAACCTTAAGCCTGAAGATAAGTTGAGTCATGTGAAGGACATTTCGAGGGATATGGGGGGAGGCCTAGTCATGGTTGGTGAGGGGATTAATGATGCCCCGGCACTTGCTGCTGCAACGGTAGGGATTGTGCTCGCTCATCGTGCTAGTGCAACCGCCATAGCAGTTGCAGATGTGTTGTTGCTTCGGGAAAATATTTCTGCAGTACCATTTTGTATTGCCAAGTCTCGCCAAACAACTTCACTGATTAAACAAAATGTGGCTCTGGCATTGTCCAGCATTTTCATGGCATCTCTTCCATCGGTCTTGGGATTTTTGCCGTTGTGGTTGACGGTTCTATTACATGAAGGTGGAACACTGCTTGTTTGTCTGAATTCCATACGCGGTTTACATGAACCAGCTTGGTCATGGAAGCAGGATGTGCTGCATTTGATAAACAGAGTAAAATCTAGACTTCTGTCACTCTCCACAAACCACACTAGCTCGAGCGCCTTGGACACCTCTAATTTGTGA 2538 0.4472 METAPNSLPPSQFQSIVFYHGAKNIGFSKSFLHLPSLSYYSTLSSRFSSRKFLRLHRRPLLCVAESSTNHHHHHHHHHSVRTQHDHHGHHHNHSDQSHHDHHGYHNHHHVHVNDSANLTGAQKAILGFAKATRWLDLADFLREHLHLCCCSTALFVLAAICPHALPKPVIKPVQNALIFIAFPLVGVPASLDALVEIGSGKVNIHVLMALAAFASIFMGNPLEGGLLLAMFNLAHIAEEYFTSRSMIDVKELKDNNPEFALVLETDRDDKLPNTVDLAYQRVPVHDVVVGSYILVGAGESVPVDCEVFQGSATITIEHLTGEVKPLEARVGDRVPGGARNLDGRIIMKATKTWKESTLNRIVQLTEEAQLNRPKLQRWLDEFGDQYSKVVVVLSVAIAVIGPLIFKWPFFSTSACRGSIYRALGLMVAASPCALAVAPLAYATAISSCAKKGILLKGGHVLDALSSCHTIAFDKTGTLTTGGLVFKAIEPIYGHKVMNNITKIPSCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGLVATLNSIELETGGAKLLKASLGSVDFITSLCQSEDESKRIREAVNASLYGSEFVHAALSVDKKVTLIHLEDRPRPGVSNVIQELQDEANFRVMMLTGDHESSARRVASAVGINEVYCNLKPEDKLSHVKDISRDMGGGLVMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSSIFMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRGLHEPAWSWKQDVLHLINRVKSRLLSLSTNHTSSSALDTSNL 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1796 845 SFLD p-type atpase 453 754 IPR044492 -
Mibi12g1796 845 SUPERFAMILY HAD-like 469 801 IPR036412 -
Mibi12g1796 845 MobiDBLite consensus disorder prediction 69 96 - -
Mibi12g1796 845 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 46 840 - -
Mibi12g1796 845 Pfam haloacid dehalogenase-like hydrolase 469 714 - -
Mibi12g1796 845 Gene3D - 243 369 - -
Mibi12g1796 845 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 204 803 IPR027256 GO:0006812|GO:0016020|GO:0019829
Mibi12g1796 845 Pfam E1-E2 ATPase 278 451 - -
Mibi12g1796 845 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 278 494 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi12g1796 845 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 617 781 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi12g1796 845 PRINTS P-type cation-transporting ATPase superfamily signature 725 737 - -
Mibi12g1796 845 PRINTS P-type cation-transporting ATPase superfamily signature 114 128 - -
Mibi12g1796 845 PRINTS P-type cation-transporting ATPase superfamily signature 624 635 - -
Mibi12g1796 845 PRINTS P-type cation-transporting ATPase superfamily signature 701 720 - -
Mibi12g1796 845 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Mibi12g1796 845 ProSitePatterns E1-E2 ATPases phosphorylation site. 473 479 IPR018303 -
Mibi12g1796 845 Gene3D - 482 632 IPR023299 GO:0000166
Mibi12g1796 845 SFLD Haloacid Dehalogenase 453 754 - -
Mibi12g1796 845 Gene3D - 464 752 IPR023214 -
Mibi12g1796 845 SUPERFAMILY Calcium ATPase, transmembrane domain M 206 505 IPR023298 -
Mibi12g1796 845 MobiDBLite consensus disorder prediction 67 108 - -
Mibi12g1796 845 CDD P-type_ATPase_HM 148 803 - -
Mibi12g1796 845 SUPERFAMILY Calcium ATPase, transduction domain A 279 364 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1796 Mibi-ChrMibi12 34185972 34195768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1796 122 826 Primary Pumps ATPases AT4G37270 76.738 0.0 1102