Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1767 ATGATATATCACGCGCATGAACCAGCCTTACTCATCCGTTTATCACTATTGTGCGCCATCTTCGCCTTGCGTACGCCCCTTGCGCACCCTCCTAACGTGCGCATCCCCTCCTTCCCCTTCTTCCTCTTCTTCCCCATCGATACTATCGCCACTCCCTCTACCATCCTCCACATCTGCAACAAGCTCAATCACCTTAAGGGCGAGATCTCTCATTTCTATTGCCCACACATGTCGAAGGCTCGCGTCTACGCTGATGTCAATGTTCTTCGCCCCAAGGAGTATTGGGATTACGAGTCTCTCACTGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTTGGAAGGGGAAAGTATAGTGAGGTGTTTGAAGGCATCAATGTTAATAGCAATGAGCGCTGCATAATTAAGATTCTGAAGCCAGTAAAAAAGAAGAAGATTAAAAGAGAGATTAAAATACTCCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATCAGCATTCAAAAACCCCCAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTCTGTATCCAACCTTGACTGATTATGACATACGCTACTACATCTATGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGATCATGATTTGCGGAAACTTCGCTTAATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGGAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGTCCTGAACTTTTAGTTGATTTACAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTCCGCAAGGAACCGTTCTTTTATGGGCATGACAACCATGATCAACTTGTGAAAATAGCTAAGGTGCTTGGAACTGATGAATTGAATGCATATCTGAATAAGTATCATCTAGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGGAAACCCTGGTCTAAATTTATTAATGCTGATAATCAACATCTTGTGTCTCCAGAGGCAATCGATTTTCTTGATAAGCTCCTTCGATATGATCACCAAGACAGGCTTACTGCAAGAGAAGCTATGGCACATCCGTATTTCTCTCAGGTAAGGGCTGCAGAAAGTAGCAGAATGAGGACACAGTAA 1230 0.4252 MIYHAHEPALLIRLSLLCAIFALRTPLAHPPNVRIPSFPFFLFFPIDTIATPSTILHICNKLNHLKGEISHFYCPHMSKARVYADVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHDLRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1767 409 CDD STKc_CK2_alpha 91 395 IPR045216 GO:0004674|GO:0006468
Mibi12g1767 409 Pfam Protein kinase domain 110 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g1767 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Mibi12g1767 409 Gene3D Transferase(Phosphotransferase) domain 1 187 395 - -
Mibi12g1767 409 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Mibi12g1767 409 Gene3D Phosphorylase Kinase; domain 1 110 186 - -
Mibi12g1767 409 FunFam Casein kinase II subunit alpha 187 398 - -
Mibi12g1767 409 PANTHER CASEIN KINASE II SUBUNIT ALPHA 76 405 IPR045216 GO:0004674|GO:0006468
Mibi12g1767 409 SUPERFAMILY Protein kinase-like (PK-like) 82 399 IPR011009 -
Mibi12g1767 409 FunFam Casein kinase II subunit alpha 96 186 - -
Mibi12g1767 409 SMART serkin_6 110 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g1767 409 ProSiteProfiles Protein kinase domain profile. 110 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1767 Mibi-ChrMibi12 33851848 33857821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1767 108 395 Core Cell Cycle Gene Families AT1G76540 29.450 2.50e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Mibi12g1767 Pkinase 1.7e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1767 12 33851848 33857821 Mibi10g0224 10 3701873 3707557 CCT
Mibi12g1767 12 33851848 33857821 Mibi12g1767 12 33851848 33857821 ECH